Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13a17f
         (426 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   2.5  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   4.4  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   4.4  
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    21   5.8  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    21   5.8  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    21   5.8  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    21   7.6  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    21   7.6  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    21   7.6  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    21   7.6  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 232 IVLSRQHMSSRGSLPQVT 285
           + LS QH  S+ SLP V+
Sbjct: 285 LTLSTQHAKSQASLPPVS 302


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -3

Query: 286 LSLEVSFRETTCAVATELFAPSITAKF 206
           LSLE ++   TC +A++     ++A +
Sbjct: 440 LSLEKTYERDTCLLASDALKQILSAAY 466


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -3

Query: 286 LSLEVSFRETTCAVATELFAPSITAKF 206
           LSLE ++   TC +A++     ++A +
Sbjct: 478 LSLEKTYERDTCLLASDALKQILSAAY 504


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 6/16 (37%), Positives = 8/16 (50%)
 Frame = -2

Query: 275 GKLPRDDMCCRDRTIC 228
           G+    D CCR   +C
Sbjct: 50  GRFKHTDACCRTHDMC 65


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 6/16 (37%), Positives = 8/16 (50%)
 Frame = -2

Query: 275 GKLPRDDMCCRDRTIC 228
           G+    D CCR   +C
Sbjct: 55  GRFKHTDACCRTHDMC 70


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 6/16 (37%), Positives = 8/16 (50%)
 Frame = -2

Query: 275 GKLPRDDMCCRDRTIC 228
           G+    D CCR   +C
Sbjct: 55  GRFKHTDACCRTHDMC 70


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +1

Query: 172 LNKESKENKSPRISQLSMAQIVLSRQHMSSRGS 270
           + K  KE+K    S  S+       QH SSR S
Sbjct: 189 IEKSGKESKKYATSSNSLRNRTHGFQHTSSRYS 221


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +1

Query: 172 LNKESKENKSPRISQLSMAQIVLSRQHMSSRGS 270
           + K  KE+K    S  S+       QH SSR S
Sbjct: 200 IEKSGKESKKYATSSNSLRNRTHGFQHTSSRYS 232


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +1

Query: 172 LNKESKENKSPRISQLSMAQIVLSRQHMSSRGS 270
           + K  KE+K    S  S+       QH SSR S
Sbjct: 200 IEKSGKESKKYATSSNSLRNRTHGFQHTSSRYS 232


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +1

Query: 172 LNKESKENKSPRISQLSMAQIVLSRQHMSSRGS 270
           + K  KE+K    S  S+       QH SSR S
Sbjct: 189 IEKSGKESKKYATSSNSLRNRTHGFQHTSSRYS 221


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,894
Number of Sequences: 438
Number of extensions: 2145
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10997463
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)