Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13a10r
         (727 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     26   0.31 
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    24   1.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.9  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   2.9  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   6.8  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    21   9.0  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     21   9.0  

>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 26.2 bits (55), Expect = 0.31
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +2

Query: 80  FARIQNCSREIRVMDSVRVILGLETERA--VTSVANSLFTNQS 202
           F R+   S E+R+ D +RV L  +   A   T++ N  F ++S
Sbjct: 67  FVRLLMSSEELRLFDKIRVFLDEDYSSAEHFTALGNFYFVHES 109


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 406 VPTKLGDVINKTGNG 362
           VP+ L  + NKTGNG
Sbjct: 84  VPSSLNVITNKTGNG 98


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 42  AAANLYTTLCLYTSPGYRTALG 107
           A  +++  L LYT+P   TALG
Sbjct: 166 AVISMHDGLVLYTTPSICTALG 187



 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 600 DIKSTCKALSSVTS*VMLVIRSPGY 674
           D+   CK L+S    ++   R+PG+
Sbjct: 468 DVSKRCKDLASFMGNLLQETRTPGF 492


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 42  AAANLYTTLCLYTSPGYRTALG 107
           A  +++  L LYT+P   TALG
Sbjct: 161 AVISMHDGLVLYTTPSICTALG 182


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 406 VPTKLGDVINKTGNG 362
           VP+ L  V +KTGNG
Sbjct: 91  VPSSLNVVSDKTGNG 105


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -2

Query: 627 TMPCMSTLCRRQLKRP 580
           T+PC   LC +   RP
Sbjct: 40  TLPCKCHLCGKAFSRP 55


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 600 DIKSTCKALSSVTS*VMLVIRSPGY 674
           D+   CK L+S    ++   R+PG+
Sbjct: 174 DVSKRCKDLASFMENLLQETRTPGF 198


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,788
Number of Sequences: 438
Number of extensions: 4938
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)