Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV13a10f
(599 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0336 + 22121913-22122111,22122295-22122344,22122538-221226... 122 3e-28
10_01_0315 - 3454846-3455465,3455562-3455663,3455828-3455954,345... 116 1e-26
04_04_0116 + 22877296-22877482,22877578-22877627,22879057-228791... 108 4e-24
04_04_0115 + 22868554-22868749,22868863-22868912,22870009-228701... 96 2e-20
03_03_0155 - 14933469-14934335,14934529-14934578,14935435-14935447 94 9e-20
09_01_0042 + 764349-764763,764853-764902,765096-765172,766179-76... 81 5e-16
02_04_0314 - 21950400-21950639,21951384-21951680,21951791-219519... 30 1.6
03_01_0566 - 4184379-4184491,4184616-4184726,4184800-4184889,418... 29 2.2
10_08_0414 + 17755427-17756000,17756181-17756308,17756434-177566... 29 3.8
04_03_0780 - 19550106-19550809,19550982-19551003 29 3.8
12_02_1018 - 25344954-25344991,25345133-25345194,25345351-253454... 28 6.6
08_01_0066 - 455589-455687,455902-455976,456531-456677,457158-45... 28 6.6
01_01_0385 + 2981293-2981345,2981803-2981851,2982215-2984953 28 6.6
11_06_0377 - 22900042-22900452,22900527-22902236 27 8.7
10_03_0021 + 7129786-7130117,7130227-7130347,7131048-7131136,713... 27 8.7
01_05_0686 - 24277812-24277909,24278029-24278081,24278227-242783... 27 8.7
>02_04_0336 +
22121913-22122111,22122295-22122344,22122538-22122661,
22122810-22122917,22123610-22124265
Length = 378
Score = 122 bits (293), Expect = 3e-28
Identities = 63/143 (44%), Positives = 86/143 (60%), Gaps = 5/143 (3%)
Frame = +2
Query: 182 FSVSVISYGATIQSIQVPDKYGITSDVVLGFDELDGYVNRNTPYLGTTVGRCANRIGGAK 361
FS+ V ++GATI S+ +PD G +DVVLG+D + YVN T Y G +GR ANRI A+
Sbjct: 46 FSIRVTNWGATIMSVILPDSKGNLADVVLGYDTVAEYVN-GTAYFGGLIGRVANRIANAR 104
Query: 362 FSIDGTTYQLANNIGKDHLHGGINGFNKANWN-----STVDGTKVIFSYLSKDGEEGYPG 526
F++DG TY+L N G + LHGG GF+K W + D ++ Y S DGE+G+PG
Sbjct: 105 FTLDGKTYRLFRNDGNNSLHGGHRGFSKVIWTVKEHVAGGDSPRITLYYHSFDGEQGFPG 164
Query: 527 DLITNITYEVTEDNALHVDFMST 595
DL +TYE+ L V +T
Sbjct: 165 DLDVFVTYELPRPYVLAVRMNAT 187
>10_01_0315 -
3454846-3455465,3455562-3455663,3455828-3455954,
3456698-3456727,3456828-3456877,3457004-3457106
Length = 343
Score = 116 bits (280), Expect = 1e-26
Identities = 61/146 (41%), Positives = 84/146 (57%), Gaps = 13/146 (8%)
Frame = +2
Query: 185 SVSVISYGATIQSIQVPDKYGITSDVVLGFDELDGYVNRN----------TPYLGTTVGR 334
+ + ++GATI S+ VPD +G +DVVLGFD L+ Y+ +PY G VGR
Sbjct: 15 TAKIAAWGATITSLIVPDAHGNLADVVLGFDTLEPYMEYVGTGKGGQKGISPYFGCIVGR 74
Query: 335 CANRIGGAKFSIDGTTYQLANNIGKDHLHGGINGFNKANWN---STVDGTKVIFSYLSKD 505
ANRI KF+++G Y LA N G + LHGG+ GF+K W+ + + F Y SKD
Sbjct: 75 VANRIKEGKFTLNGVEYSLAINNGPNSLHGGLKGFDKVVWDVVERKSECPSITFQYHSKD 134
Query: 506 GEEGYPGDLITNITYEVTEDNALHVD 583
GEEGYPGD+ TY + + L +D
Sbjct: 135 GEEGYPGDVTVRATYSLPDSTTLRLD 160
>04_04_0116 +
22877296-22877482,22877578-22877627,22879057-22879180,
22879266-22879373,22879462-22880084
Length = 363
Score = 108 bits (259), Expect = 4e-24
Identities = 58/156 (37%), Positives = 85/156 (54%), Gaps = 5/156 (3%)
Frame = +2
Query: 143 ETVSKFTWRASDGFSVSVISYGATIQSIQVPDKYGITSDVVLGFDELDGYVNRNTPYLGT 322
+TV ++ R D FSV + ++GAT+ S+ +PD G +DVVLG D + YVN +T Y G
Sbjct: 30 KTVGEYVLRKGD-FSVKITNWGATMMSVVLPDSKGNLADVVLGLDTIAEYVN-DTNYFGP 87
Query: 323 TVGRCANRIGGAKFSIDGTTYQLANNIGKDHLHGGINGFNKANWN-----STVDGTKVIF 487
GR RI +F +DG Y N G++ +HGG GF+K W D +
Sbjct: 88 VTGRVGQRIARGRFVLDGKVYHTYINDGRNAIHGGHRGFSKVIWTVKEYVGGGDSPYITL 147
Query: 488 SYLSKDGEEGYPGDLITNITYEVTEDNALHVDFMST 595
Y S DGE+G+PGDL +TY+++ L + +T
Sbjct: 148 YYRSFDGEQGFPGDLDAYVTYQLSSPYVLALRMNAT 183
>04_04_0115 +
22868554-22868749,22868863-22868912,22870009-22870195,
22870226-22870333,22872501-22873165
Length = 401
Score = 95.9 bits (228), Expect = 2e-20
Identities = 65/184 (35%), Positives = 87/184 (47%), Gaps = 26/184 (14%)
Frame = +2
Query: 122 DFGQHHGETVSKFTWRASDGFSVSVISYGATIQSIQVPDKYGITSDVVLGFDELDGYVNR 301
D + TV + R D FS+ V ++GA I S+ +PD G DVVLG+D + YVN
Sbjct: 26 DAAERKATTVGVYELRKGD-FSIRVTNWGAVIMSVVLPDSRGKLDDVVLGYDTIAEYVNS 84
Query: 302 NTPYLGTTVGRCANRIGGAKFSIDGTTYQLANNIGKDHLHG------------------- 424
+T Y G VGR ANRI A+F +DG Y L N GK+ LHG
Sbjct: 85 ST-YFGALVGRVANRIAKARFVLDGKAYHLYPNDGKNTLHGILEKFPEVQEIHGAWFIST 143
Query: 425 --GINGFNKANWN-----STVDGTKVIFSYLSKDGEEGYPGDLITNITYEVTEDNALHVD 583
G GF+ W D + Y S DGE+G+PG L +TY+++ L V
Sbjct: 144 NSGHRGFSNVTWTVKEHVGGGDAPYITLYYHSFDGEQGFPGALDVYVTYQLSGPYVLSVH 203
Query: 584 FMST 595
+T
Sbjct: 204 MNAT 207
>03_03_0155 - 14933469-14934335,14934529-14934578,14935435-14935447
Length = 309
Score = 93.9 bits (223), Expect = 9e-20
Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 4/116 (3%)
Frame = +2
Query: 245 GITSDVVLGFDELDGYVNRNTPYLGTTVGRCANRIGGAKFSIDGTTYQLANNIGKDHLHG 424
G DVVLG+ ++ YVN +T Y G VGR ANRI G +F++ G + N GK+ LHG
Sbjct: 5 GHIDDVVLGYKDIGSYVN-DTTYFGALVGRVANRIAGGRFTVKGHAFHTYKNDGKNTLHG 63
Query: 425 GINGFNKANWN----STVDGTKVIFSYLSKDGEEGYPGDLITNITYEVTEDNALHV 580
G GFN+ W+ +T + F Y S DGE+G+PG L +TY++ D + V
Sbjct: 64 GHRGFNQVFWSVRERATGHFPYITFYYRSYDGEQGFPGALDVLVTYKIDGDYSFSV 119
>09_01_0042 +
764349-764763,764853-764902,765096-765172,766179-766236,
767481-767607,768665-768769,768842-769424,769470-769775,
770048-770139,770391-770440
Length = 620
Score = 81.4 bits (192), Expect = 5e-16
Identities = 40/103 (38%), Positives = 53/103 (51%), Gaps = 4/103 (3%)
Frame = +2
Query: 287 GYVNRNTPYLGTTVGRCANRIGGAKFSIDGTTYQLANNIGKDHLHGGINGFNKANWNSTV 466
G N +PY G VGR ANRI KF+++ Y LA N + LHGG GF+K W
Sbjct: 198 GVPNGTSPYFGCIVGRVANRIKDGKFTLNDKQYSLAINNPPNTLHGGFKGFDKIIWEVAE 257
Query: 467 ----DGTKVIFSYLSKDGEEGYPGDLITNITYEVTEDNALHVD 583
+ + F Y SKDGEEG+PGD+ Y + L ++
Sbjct: 258 YVKGENPSITFKYYSKDGEEGFPGDVSVTARYSILASTTLKLE 300
Score = 43.2 bits (97), Expect = 2e-04
Identities = 18/33 (54%), Positives = 23/33 (69%)
Frame = +2
Query: 194 VISYGATIQSIQVPDKYGITSDVVLGFDELDGY 292
+ + GAT+ S+ VPD G+ DVVLGFD LD Y
Sbjct: 122 ITNVGATVTSLLVPDNNGVLGDVVLGFDSLDPY 154
>02_04_0314 -
21950400-21950639,21951384-21951680,21951791-21951920,
21952377-21952699,21953385-21953606,21953693-21954089,
21954488-21954540
Length = 553
Score = 29.9 bits (64), Expect = 1.6
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Frame = -3
Query: 327 TVVPKY-GVFLFTYPSSSSKPRTTSLVIPYLSGT*IDCMVAPY--EMTDTEKPSDALHVN 157
TV+PK V YP++ S T S+++P +S + C+ + E DTE+ D+
Sbjct: 76 TVLPKSTSVRGQDYPTADSVLPTESIIVPEISNAGLKCVADMFSDEDKDTEQDLDSPTEG 135
Query: 156 FETVS 142
F ++S
Sbjct: 136 FSSIS 140
>03_01_0566 -
4184379-4184491,4184616-4184726,4184800-4184889,
4184996-4185113
Length = 143
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2
Query: 92 IINMVTLNVEDFGQHHGETVSKFTWR 169
I ++VTL D QHHG++ KFT R
Sbjct: 82 IRSLVTLAFADLLQHHGQSARKFTTR 107
>10_08_0414 +
17755427-17756000,17756181-17756308,17756434-17756694,
17756774-17757036,17758662-17759019
Length = 527
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = -3
Query: 378 VPSMLNFAPPILLAQRPTVVPKYGVFLFTYPSSSSK---PRTTSLVIPYLSGT 229
+ S ++F P LL T +G LF PS+ K PR SL++ +LS +
Sbjct: 26 IQSPMDFGPLNLLPTTTTASSDFGRILFHSPSAVLKPQAPRDISLLLSFLSAS 78
>04_03_0780 - 19550106-19550809,19550982-19551003
Length = 241
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 227 QVPDKYGITSDVVLGFDELDGYVNRNTPYLGTTVGRCANR 346
+V DK G+T +LGFD G + TT+GR + R
Sbjct: 66 KVLDKRGLTMWNLLGFDTKAGIATDRPLIVRTTIGRASKR 105
>12_02_1018 -
25344954-25344991,25345133-25345194,25345351-25345483,
25346119-25346182
Length = 98
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +2
Query: 425 GINGFNKANWNSTVDGTKVIFSYLSKDGEEGYPGDL 532
G+NG N++ ++G++ + +Y KDG+ GD+
Sbjct: 28 GVNGMNESKIADLLNGSEYVPTYEDKDGDWMLVGDV 63
>08_01_0066 -
455589-455687,455902-455976,456531-456677,457158-457292,
457380-457508,457719-457814,458212-458403
Length = 290
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = -3
Query: 357 APPILLAQRPTVVPKYGVFLFTYPSSSSKPRTTS 256
+PP+L A+RPTV + G+FL P++S R S
Sbjct: 12 SPPVLSAERPTV--RGGLFLPPSPATSRSLRLQS 43
>01_01_0385 + 2981293-2981345,2981803-2981851,2982215-2984953
Length = 946
Score = 27.9 bits (59), Expect = 6.6
Identities = 21/74 (28%), Positives = 26/74 (35%)
Frame = +2
Query: 296 NRNTPYLGTTVGRCANRIGGAKFSIDGTTYQLANNIGKDHLHGGINGFNKANWNSTVDGT 475
N NTP G T G A + Q A + L G GF K DGT
Sbjct: 557 NANTPGGGATPGMAAAASSSPSYRFPFAALQDATGNFDEGLVIGEGGFGKVYAAVLQDGT 616
Query: 476 KVIFSYLSKDGEEG 517
KV + + +G
Sbjct: 617 KVAVKRANPESRQG 630
>11_06_0377 - 22900042-22900452,22900527-22902236
Length = 706
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +2
Query: 410 DHLHGGINGFNKANWNSTVDGTKVIFSYLSKDGEEGYPGDLITNI 544
D +H G NG+ + + ++ DG F+ L DGEE G L+ +
Sbjct: 347 DEVHRGANGYREGHRSAHDDGEGPPFAALD-DGEERPLGGLVEEL 390
>10_03_0021 +
7129786-7130117,7130227-7130347,7131048-7131136,
7131375-7131459,7131609-7131771,7132861-7132937,
7133016-7133160,7133236-7133537,7133615-7133720,
7134781-7134935,7135556-7135712,7135799-7135891,
7136232-7136359,7136439-7136696,7136855-7137145,
7137235-7137318,7138335-7138468,7138557-7138784,
7139778-7139958,7140021-7140108,7140268-7140434,
7140750-7141012,7141117-7141120
Length = 1216
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -2
Query: 403 NVVSELISRAVDAEFCSADPVGTAADRG 320
N+VS+ + R + + C+ PVG+ +RG
Sbjct: 299 NLVSDYVLRVLGLDICADTPVGSDMERG 326
>01_05_0686 -
24277812-24277909,24278029-24278081,24278227-24278309,
24278353-24278401,24278466-24278514,24279455-24280418
Length = 431
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +2
Query: 314 LGTTVGRCANRIGGAKFSIDGTTYQLANNIGKDHLHGGINGFNKANWNSTVDGTKV 481
LG GR ++ +GGA S DG T N+ G D + + + VDG ++
Sbjct: 270 LGEAFGRESSPLGGASGSGDGDTTARENDEGDDDVTLSTEASAGSQHDGEVDGIQL 325
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,867,409
Number of Sequences: 37544
Number of extensions: 367274
Number of successful extensions: 846
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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