Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13a10f
         (599 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    29   0.035
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    29   0.035
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   2.3  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   5.3  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   5.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   5.3  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     22   5.3  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   7.0  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   9.2  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 29.1 bits (62), Expect = 0.035
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 419  HGGINGFNKANWNSTVDGTKVIFSYLSKDGEEG 517
            HG I GFN     ++       FS +S DGEEG
Sbjct: 1036 HGDIQGFNVGYRETSSSNPSYNFSSVSGDGEEG 1068


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 29.1 bits (62), Expect = 0.035
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 419  HGGINGFNKANWNSTVDGTKVIFSYLSKDGEEG 517
            HG I GFN     ++       FS +S DGEEG
Sbjct: 1032 HGDIQGFNVGYRETSSSNPSYNFSSVSGDGEEG 1064


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -3

Query: 288 PSSSSKPRTTSLVIPYLSGT*IDCMVAPYEMTDT 187
           PS+S      S+V+   +G+ I+C ++P    D+
Sbjct: 351 PSTSECGEFRSVVVQKRNGSMIECNISPRSSADS 384


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 388 TR*QHWERSFTW 423
           T+ QHW R  TW
Sbjct: 18  TQAQHWSRGNTW 29


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 388 TR*QHWERSFTW 423
           T+ QHW R  TW
Sbjct: 18  TQAQHWSRGNTW 29


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -3

Query: 594 VDIKSTCKALSSVTS*VMLVIRSPGY 517
           +D+   CK L+S    ++   R+PG+
Sbjct: 467 LDVSKRCKDLASFMGNLLQETRTPGF 492


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -3

Query: 594 VDIKSTCKALSSVTS*VMLVIRSPGY 517
           +D+   CK L+S    ++   R+PG+
Sbjct: 173 LDVSKRCKDLASFMENLLQETRTPGF 198


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 133 LSKILNIQSHHVYYSKRMIQAAINN*ENN 47
           L  IL++  +H     +  Q +INN  NN
Sbjct: 112 LKVILDLVPNHTSDQHKWFQMSINNTNNN 140


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 285 SSSSKPRTTSLVIPYLS 235
           S+S   RTTS + PY+S
Sbjct: 77  STSPAARTTSSMYPYVS 93


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,822
Number of Sequences: 438
Number of extensions: 3855
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)