Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13a08f
         (677 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF389427-1|AAM69450.1|  998|Homo sapiens semaphorin 6D isoform 2...    33   1.2  
BC021215-1|AAH21215.1|  442|Homo sapiens chromosome 5 open readi...    30   6.6  

>AF389427-1|AAM69450.1|  998|Homo sapiens semaphorin 6D isoform 2
           protein.
          Length = 998

 Score = 32.7 bits (71), Expect = 1.2
 Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
 Frame = -2

Query: 610 WISQGSCG---PGAVVQ*VKICHNLETCVTGHLKEGDTH--TFNCTSGDASKMRHLSFLI 446
           W+SQGSCG   PG + +  +   + E   T HL  GD H   +   SG++++M H++ LI
Sbjct: 535 WLSQGSCGRVTPGMLAEGYE--QDTEFGNTAHL--GDCHGVRWEVQSGESNQMVHMNVLI 590

Query: 445 S 443
           +
Sbjct: 591 T 591


>BC021215-1|AAH21215.1|  442|Homo sapiens chromosome 5 open reading
           frame 22 protein.
          Length = 442

 Score = 30.3 bits (65), Expect = 6.6
 Identities = 14/49 (28%), Positives = 19/49 (38%)
 Frame = +2

Query: 5   KIPNIAMKRXXXXXXXXXXXXXXGTELPLATPCDEEACKLPDCRCSSTN 151
           K P +A++               G E   AT   ++ C  P C CSS N
Sbjct: 178 KKPKLALEDSENTASTNCDSSSEGLEKDTATQRSDQTCLEPSCSCSSEN 226


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,049,100
Number of Sequences: 237096
Number of extensions: 2427308
Number of successful extensions: 6353
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6352
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7671262118
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)