Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13a08f
         (677 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    30   0.018
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   2.0  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   6.2  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    21   8.2  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    21   8.2  
AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin prot...    21   8.2  
AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin prot...    21   8.2  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    21   8.2  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 30.3 bits (65), Expect = 0.018
 Identities = 15/73 (20%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
 Frame = +2

Query: 215 INVINIETYREVLYGRSNSN-RCPAGATFYVSHEYTNYQLVNELYNRGFEIALHSISHRT 391
           + + ++E Y  ++Y  ++ + +    +TF     YT Y + +E ++    I   ++SH+T
Sbjct: 200 VYIADVEGYALIIYNNADDSFQRLTSSTFVYDPRYTKYTINDESFSLQDGILGMALSHKT 259

Query: 392 PQAFWADATYQNL 430
              +++  +  NL
Sbjct: 260 QNLYYSAMSSHNL 272


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 300 TSATSTQTISWSTNSTIEASRLLYIRSVTEPPRRSGL 410
           +S+T+T +   ST STI  + L    SVT  P +  L
Sbjct: 324 SSSTTTTSPMTSTKSTIVRNHLNSTCSVTNSPHQKKL 360


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 12/34 (35%), Positives = 14/34 (41%)
 Frame = -3

Query: 138 HLQSGSLQASSSHGVANGSSVPRAAATRSKEHKT 37
           HL   S  A S    A  S  P+ A+  S  H T
Sbjct: 672 HLHLTSPPARSPSSQAQASQCPQTASLLSSTHST 705


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/27 (25%), Positives = 15/27 (55%)
 Frame = +2

Query: 305 SHEYTNYQLVNELYNRGFEIALHSISH 385
           ++ Y NY   N  YN  ++   ++I++
Sbjct: 331 NNNYNNYNNYNNNYNNNYKKLYYNINY 357


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -1

Query: 473 QNAPFVFSDLQFPGPSFDTWHQPRTPGGF 387
           + AP  F  ++    SFD  +  R P GF
Sbjct: 86  KRAPMGFQGMRGKKASFDDEYYKRAPMGF 114


>AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin
           protein.
          Length = 124

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -1

Query: 473 QNAPFVFSDLQFPGPSFDTWHQPRTPGGF 387
           + AP  F  ++    SFD  +  R P GF
Sbjct: 87  KRAPMGFQGMRGKKASFDDEYYKRAPMGF 115


>AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin
           protein.
          Length = 215

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -1

Query: 473 QNAPFVFSDLQFPGPSFDTWHQPRTPGGF 387
           + AP  F  ++    SFD  +  R P GF
Sbjct: 86  KRAPMGFQGMRGKKASFDDEYYKRAPMGF 114


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -1

Query: 473 QNAPFVFSDLQFPGPSFDTWHQPRTPGGF 387
           + AP  F  ++    SFD  +  R P GF
Sbjct: 86  KRAPMGFQGMRGKKASFDDEYYKRAPMGF 114


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,378
Number of Sequences: 438
Number of extensions: 4797
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)