Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV13a07f
(613 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0224 - 15993497-15994075 27 0.79
06_03_0744 - 24098670-24098951 31 0.95
10_08_0749 - 20282982-20283632,20284081-20284141,20284828-202848... 30 1.3
05_01_0141 - 937428-937717,938483-938705 30 1.7
06_03_0887 + 25688726-25689616,25689759-25690406 29 2.2
01_05_0619 - 23737178-23737378,23737460-23737516,23737597-237377... 29 2.2
01_01_0256 - 2083973-2084816,2084922-2086093 29 2.2
07_03_0965 - 22996575-22999112,22999202-22999636,22999717-229998... 29 2.9
05_01_0142 - 940421-940701,941262-941574 29 3.8
01_01_0667 + 5099026-5099188,5099262-5099661,5099748-5100648 29 3.8
09_04_0579 + 18676165-18676524,18676846-18677058,18677136-186772... 28 5.1
07_03_1344 - 25912639-25914060 28 5.1
04_01_0417 - 5523911-5523976,5525131-5525321,5525807-5526044 28 5.1
02_04_0035 + 19078267-19078479,19078588-19078674,19079792-190798... 28 5.1
07_03_0860 + 22057309-22058453,22059833-22059964,22060328-220604... 28 6.7
06_01_0893 - 6834350-6834464,6835042-6835218,6835301-6835350,683... 28 6.7
05_02_0145 + 7067521-7068993 28 6.7
04_04_0690 - 27300048-27300929 28 6.7
04_03_0249 + 13462985-13463170,13463190-13463297 28 6.7
03_05_0025 + 19938138-19938306,19938899-19939505,19939613-199397... 28 6.7
03_01_0012 - 101584-101898,102274-102531,102932-103474 28 6.7
02_05_0100 - 25821606-25822349 28 6.7
01_07_0343 - 42866940-42867656 28 6.7
10_05_0017 + 8037822-8038211 27 8.9
10_02_0073 + 4940672-4940699,4941172-4941250,4941685-4941775 27 8.9
07_03_1084 - 23849582-23849965 27 8.9
06_01_1098 - 9017236-9018660 27 8.9
03_06_0348 - 33299824-33300234 27 8.9
01_07_0015 + 40469839-40470672,40471185-40471229,40471255-40471266 27 8.9
01_05_0676 + 24195350-24195884,24195975-24196522 27 8.9
>10_08_0224 - 15993497-15994075
Length = 192
Score = 26.6 bits (56), Expect(2) = 0.79
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -3
Query: 356 SAPGPPAVSRGHGASVAQQGGSAHGGAT 273
S G + GHGA GG GGAT
Sbjct: 52 SGSGYGVATSGHGAHAHSSGGGGGGGAT 79
Score = 23.0 bits (47), Expect(2) = 0.79
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = -3
Query: 296 GSAHGGATVGQSNHHSG 246
G GG TVG S + SG
Sbjct: 120 GGGQGGGTVGSSGYGSG 136
>06_03_0744 - 24098670-24098951
Length = 93
Score = 30.7 bits (66), Expect = 0.95
Identities = 15/57 (26%), Positives = 30/57 (52%)
Frame = -3
Query: 431 IVSVNSESTSEELSGAETQLKRASLSAPGPPAVSRGHGASVAQQGGSAHGGATVGQS 261
++++ +++ + +E++ A+ +A P A + G G A GG+A GGA S
Sbjct: 12 VLAIAFAASATAVLASESEAGGAAAAAAEPTAPAPGAGGEAAAAGGAAAGGAAAATS 68
>10_08_0749 -
20282982-20283632,20284081-20284141,20284828-20284872,
20285293-20285672,20286382-20287050
Length = 601
Score = 30.3 bits (65), Expect = 1.3
Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 9/74 (12%)
Frame = -3
Query: 332 SRGHGASVAQQGGSAHGGAT---------VGQSNHHSGKMWMSA*PRHTASYDPGAVEVS 180
S+G GA V GG GGAT +G+ +HH + S P + + P A S
Sbjct: 56 SKGVGALVVGGGGVDDGGATTLPTVHFGGLGELHHHQHR--QSQAPLSLSLHRPEAAATS 113
Query: 179 ALLSALELHRHRDP 138
L+ + H H P
Sbjct: 114 LLMQQQQQHLHHQP 127
>05_01_0141 - 937428-937717,938483-938705
Length = 170
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = -3
Query: 365 ASLSAPGPPAVSRGHGASVAQQGGSAHGGATVGQSNHHSG 246
A+ +A G +S GHG GG HGG G HH G
Sbjct: 91 AAAAAYGAHKLSHGHGHGGYGYGGH-HGGLFGGHHGHHGG 129
>06_03_0887 + 25688726-25689616,25689759-25690406
Length = 512
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +3
Query: 123 YHEVIGIPMAMELKSAEEGADFDGARIVGGSVAGLGTHPHLAAMV 257
+ E+I P AM+ +AE DF+ A V S +G P+L +V
Sbjct: 315 FAELIRNPAAMKKATAEVRRDFEAAGAVSESALAVGELPYLRLVV 359
>01_05_0619 -
23737178-23737378,23737460-23737516,23737597-23737755,
23739477-23739621,23739725-23740136,23740693-23740855
Length = 378
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 329 RGHGASVAQQGGSAHGGATVGQSNHHSGK 243
RGHG +GG GG T G++ SG+
Sbjct: 126 RGHGPRQPYRGGGRRGGYTGGEAGDESGR 154
>01_01_0256 - 2083973-2084816,2084922-2086093
Length = 671
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 254 GDYSDRRSHLHVRSLPAEPHSLRDRGSLLEDQERSRT 364
G S R S + + PA+P S GSLL+D +S +
Sbjct: 149 GGGSSRTSRIRLFLFPAKPESSSSLGSLLDDSSKSES 185
>07_03_0965 -
22996575-22999112,22999202-22999636,22999717-22999801,
22999888-22999957,23000050-23000293,23000396-23000482,
23000655-23000706,23000830-23001226,23001324-23001648,
23001748-23001914,23002007-23002547
Length = 1646
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Frame = -3
Query: 419 NSESTSEELSGAETQ---LKRASLSAPGPPAVSRGHGASVAQQGGSAHGGATVGQSNHH 252
+ E EEL+ + + ++R S S PP+ + G S+ GG G NHH
Sbjct: 83 DDEDADEELAASAPRYPPVQRRSPSTAPPPSPPQPSGGGGHHHSSSSSGGGGGGYHNHH 141
>05_01_0142 - 940421-940701,941262-941574
Length = 197
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = -3
Query: 332 SRGHGASVAQQGGSAHGGATVGQSNHHSGK 243
S GHG + G GG G HH GK
Sbjct: 137 SHGHGGHMGYGGHGGFGGYGHGYGGHHGGK 166
>01_01_0667 + 5099026-5099188,5099262-5099661,5099748-5100648
Length = 487
Score = 28.7 bits (61), Expect = 3.8
Identities = 22/75 (29%), Positives = 33/75 (44%)
Frame = -3
Query: 431 IVSVNSESTSEELSGAETQLKRASLSAPGPPAVSRGHGASVAQQGGSAHGGATVGQSNHH 252
I S ES + +G S SAP PA S H ++ A +A GAT+ + + H
Sbjct: 302 IGSSTPESGGAQQAGLSFGFSSTS-SAPPHPAASSAHMSATALLQKAAQMGATLSRPSSH 360
Query: 251 SGKMWMSA*PRHTAS 207
+ +A H +S
Sbjct: 361 AHMAAAAAASTHNSS 375
>09_04_0579 +
18676165-18676524,18676846-18677058,18677136-18677288,
18677503-18677622,18677696-18677782,18677876-18678313
Length = 456
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/52 (25%), Positives = 25/52 (48%)
Frame = +3
Query: 156 ELKSAEEGADFDGARIVGGSVAGLGTHPHLAAMVITLTDGRTSMCGASLLSH 311
EL +++ D+DGAR + + PH + + D ++ + S +SH
Sbjct: 160 ELVGSKKVGDYDGARCCACAKPEIAATPHKTKDICGMDDAKSDVVDRSSVSH 211
>07_03_1344 - 25912639-25914060
Length = 473
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 177 GADFDGARIVGGSVAGLGTHPHLAAMVITLT 269
G + A IVGG +AGL HLA+M + T
Sbjct: 43 GGGGNKAVIVGGGLAGLAAANHLASMSVPFT 73
>04_01_0417 - 5523911-5523976,5525131-5525321,5525807-5526044
Length = 164
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 371 KRASLSAPGPPAVSRGHGASVAQQGGSAHGGATVG 267
++A L G +RG G A++GG A GG +G
Sbjct: 105 EKAELVLAGGGRRARGGGLRCAEEGGGAEGGGRLG 139
>02_04_0035 +
19078267-19078479,19078588-19078674,19079792-19079863,
19080338-19080526,19080599-19080718,19081348-19081430,
19081518-19081773,19081878-19082199,19086355-19086548,
19087135-19087227,19089327-19089497,19089580-19089699,
19090303-19090373,19090608-19090675,19091097-19091191
Length = 717
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -3
Query: 365 ASLSAPGPPAVSRGHGASVAQQGGSAHGGATVG 267
AS+S A SRG G + +GGS GG VG
Sbjct: 476 ASMSDGKVTAASRGQGEASVGRGGSTAGGRGVG 508
>07_03_0860 + 22057309-22058453,22059833-22059964,22060328-22060412,
22061666-22061867,22062273-22062344,22062509-22062573,
22062682-22062741,22063033-22064379,22064463-22064607,
22064688-22067442,22068540-22068630,22068655-22068873
Length = 2105
Score = 27.9 bits (59), Expect = 6.7
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Frame = -3
Query: 341 PAVSRGHGASVAQQGGSAHGG-ATVGQSNHHSG-KMWMSA*PRHTASYDPGAVEVSALLS 168
P+++ G G++ GS G + V H +G M S T S PG +V+ L
Sbjct: 878 PSMNTGPGSNKDNLAGSTTSGHSQVTGKPHPAGLHMEKSGVQTVTISAPPGKSDVNKLKP 937
Query: 167 ALELHRHRDPDHLMVVGL 114
A ++ HR D+ V G+
Sbjct: 938 AEDVVSHRQKDNEAVSGV 955
>06_01_0893 -
6834350-6834464,6835042-6835218,6835301-6835350,
6836348-6836416,6836495-6836593,6836681-6836759,
6837604-6837704,6838645-6838713,6839548-6839588,
6839793-6841159,6841472-6841575,6841914-6842351,
6843040-6843567
Length = 1078
Score = 27.9 bits (59), Expect = 6.7
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = -3
Query: 365 ASLSAPGPPAVSRGHGASVAQQGGSAHGGATVGQSNHHSG-KMWMSA 228
AS AP PP +G G GG GG + H SG W+S+
Sbjct: 18 ASSLAPPPPVSKKGGGG-----GGGGGGGGAQHEHKHGSGISSWLSS 59
>05_02_0145 + 7067521-7068993
Length = 490
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +2
Query: 470 QRRGYDYPRTGRIHKCDPADLPAPLTSPQQPIRGYLGLGCWL 595
+ G D+ G I + L P +PQ I G+ +GC+L
Sbjct: 342 EEEGMDFLPEGFIERTRGVGLLVPSWAPQTSILGHASIGCFL 383
>04_04_0690 - 27300048-27300929
Length = 293
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = -3
Query: 392 SGAETQLKRASLSAPGPPAVSRGHGASVAQQGGSAHGGATVG 267
+GA T + A AV+ G A +GG A G ATVG
Sbjct: 79 TGARTGAASSGAGADVGGAVAGGSAAGGVARGGEATGAATVG 120
>04_03_0249 + 13462985-13463170,13463190-13463297
Length = 97
Score = 27.9 bits (59), Expect = 6.7
Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Frame = -3
Query: 353 APGPPAVSRG-HGASVAQQGGSAHGGATVGQSNHHSGKMWMSA*PRHTASYDPGAVEVSA 177
A G AV G GAS A GS G G+ G +W P+ + G V VSA
Sbjct: 18 ADGGDAVGAGTEGASRAALEGSG-GREGSGRCGRRHGLLWAETWPQRHVRWRCGMVRVSA 76
Query: 176 LL 171
L
Sbjct: 77 AL 78
>03_05_0025 +
19938138-19938306,19938899-19939505,19939613-19939723,
19941891-19941972,19942033-19942080
Length = 338
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +3
Query: 165 SAEEGADFDGARIVGGSVAGLGTHPHLAAMVITLTDGRTSMCG 293
+ ++G D DG R G VAGL T P + ++ D CG
Sbjct: 49 NGDDGDDNDGGRHTYGKVAGLRTIPSVVKSIV--RDNIRPRCG 89
>03_01_0012 - 101584-101898,102274-102531,102932-103474
Length = 371
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -3
Query: 392 SGAETQLKRASLSAPGPPAVSRGHGASVAQQGGSAH 285
S A+ Q+ AS++ P PP++ A++ +G +AH
Sbjct: 138 SYAQEQIIPASVAVPLPPSIDHNTAAAIMLKGMTAH 173
>02_05_0100 - 25821606-25822349
Length = 247
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -3
Query: 356 SAPGPPAVSRGHGASVAQQGGSAHGGATVGQSNHHS 249
+AP P+ R A+ A GG+AHG GQ HS
Sbjct: 205 TAPAGPSSGRQPSAA-AHPGGAAHGQPEKGQPGGHS 239
>01_07_0343 - 42866940-42867656
Length = 238
Score = 27.9 bits (59), Expect = 6.7
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Frame = -3
Query: 380 TQLKRASLSA----PGPPAVSRGHGASVAQQGGSAHGGATVGQSNHHSGK 243
++L+RAS S+ P + G GA A+ GG A GG G +N+ S K
Sbjct: 70 SRLRRASSSSSSSFPAFASKGAGTGADEAESGGGADGGN--GNTNNSSSK 117
>10_05_0017 + 8037822-8038211
Length = 129
Score = 27.5 bits (58), Expect = 8.9
Identities = 31/115 (26%), Positives = 43/115 (37%), Gaps = 9/115 (7%)
Frame = -3
Query: 392 SGAETQLKRASLSAPGPPAVSRGHGASVAQQGGSA---------HGGATVGQSNHHSGKM 240
SG + QL+ + +A + +VAQQGGSA A V + H SG
Sbjct: 6 SGGDAQLRHPAAAAAAARLGQQQRRTAVAQQGGSAAVAVAAAARRQRAAVHGTTHSSGGA 65
Query: 239 WMSA*PRHTASYDPGAVEVSALLSALELHRHRDPDHLMVVGLYGYEGMGSSRQRK 75
+ R Y L A+ ++ R HL GL G RQR+
Sbjct: 66 LAGSGAR---VYRGDTTTRQTLGHAVRVNAKRSRHHLNKEGLEKISHRGKQRQRQ 117
>10_02_0073 + 4940672-4940699,4941172-4941250,4941685-4941775
Length = 65
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/43 (32%), Positives = 18/43 (41%)
Frame = -3
Query: 374 LKRASLSAPGPPAVSRGHGASVAQQGGSAHGGATVGQSNHHSG 246
LK S P +RG G + GGS G A ++H G
Sbjct: 19 LKVLIASLTNSPQAARGRGVAARLGGGSGSGAAAEQDASHGGG 61
>07_03_1084 - 23849582-23849965
Length = 127
Score = 27.5 bits (58), Expect = 8.9
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Frame = -3
Query: 329 RGHGASVAQQGGSAHGGATVGQSNHHSGKMWMSA*PRHTASYD--PGAVEVSALLSALEL 156
RG V+ Q GS+HGG G S H W A +A+ D PG+V+ + A E
Sbjct: 57 RGGYRGVSSQDGSSHGGG--GGSRRHLIDYWELA---GSAAEDARPGSVQET---GAAED 108
Query: 155 HRHRDPDHLMVVG 117
R R P ++ G
Sbjct: 109 ERSRPPAAVVAAG 121
>06_01_1098 - 9017236-9018660
Length = 474
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 189 DGARIVGGSVAGLGTHPHLAAMVITLT 269
DGAR + G VAGL T P + ++ T
Sbjct: 229 DGARYIHGKVAGLRTIPSVVNRIVRAT 255
>03_06_0348 - 33299824-33300234
Length = 136
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -3
Query: 350 PGPPAVSRGHGASVAQQGGSAHGGAT 273
PG PAV G+G GG+ G T
Sbjct: 70 PGFPAVGGGYGGGFGNNGGAVFSGVT 95
>01_07_0015 + 40469839-40470672,40471185-40471229,40471255-40471266
Length = 296
Score = 27.5 bits (58), Expect = 8.9
Identities = 19/70 (27%), Positives = 33/70 (47%)
Frame = -3
Query: 413 ESTSEELSGAETQLKRASLSAPGPPAVSRGHGASVAQQGGSAHGGATVGQSNHHSGKMWM 234
+S E + Q + A ++A G + ASVA S + + + +S+HH MW
Sbjct: 121 KSDGETVQWLLQQAEPAIVAATGTGTIPASALASVAPSLPSPN--SALSRSHHHHHHMWA 178
Query: 233 SA*PRHTASY 204
+A P +A +
Sbjct: 179 AAPPTASAGF 188
>01_05_0676 + 24195350-24195884,24195975-24196522
Length = 360
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 189 DGARIVGGSVAGLGTHPHLAAMVI 260
DGAR G VAGL T P + M++
Sbjct: 201 DGARYTHGKVAGLRTIPSVVNMIV 224
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,313,990
Number of Sequences: 37544
Number of extensions: 331567
Number of successful extensions: 1659
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1650
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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