Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV13a06r
(665 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF414442-1|AAL65133.2|22152|Homo sapiens ovarian cancer related ... 31 4.9
AF361486-1|AAK74120.3| 6995|Homo sapiens mucin 16 protein. 31 4.9
Z92546-1|CAB62953.1| 822|Homo sapiens bK65A6.2 (novel Sushi dom... 30 6.5
BC033107-1|AAH33107.1| 822|Homo sapiens sushi domain containing... 30 6.5
L19711-1|AAA81779.1| 895|Homo sapiens dystroglycan protein. 30 8.5
BC014616-1|AAH14616.1| 895|Homo sapiens dystroglycan 1 (dystrop... 30 8.5
BC012740-1|AAH12740.1| 895|Homo sapiens dystroglycan 1 (dystrop... 30 8.5
AB209848-1|BAD93085.1| 552|Homo sapiens MutL protein homolog 1 ... 30 8.5
>AF414442-1|AAL65133.2|22152|Homo sapiens ovarian cancer related tumor
marker CA125 protein.
Length = 22152
Score = 30.7 bits (66), Expect = 4.9
Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 11/86 (12%)
Frame = -2
Query: 340 ELTTLRSVVSLLEMVAFGNTAASTIDPVF-----------ITRGDMEVRWRHSTKNSIS* 194
+L T + + GNT+ ST P F +T G E+ T ++
Sbjct: 8668 DLVTTKPTSPMATTSTLGNTSVSTSTPAFPETMMTQPTSSLTSGLREISTSQETSSATER 8727
Query: 193 ST*LSEAPMVSSLMVSRTLFLSLGGT 116
S LS P ++ VSRT LSLG T
Sbjct: 8728 SASLSGMPTGATTKVSRTEALSLGRT 8753
>AF361486-1|AAK74120.3| 6995|Homo sapiens mucin 16 protein.
Length = 6995
Score = 30.7 bits (66), Expect = 4.9
Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 11/86 (12%)
Frame = -2
Query: 340 ELTTLRSVVSLLEMVAFGNTAASTIDPVF-----------ITRGDMEVRWRHSTKNSIS* 194
+L T + + GNT+ ST P F +T G E+ T ++
Sbjct: 372 DLVTTKPTSPMATTSTLGNTSVSTSTPAFPETMMTQPTSSLTSGLREISTSQETSSATER 431
Query: 193 ST*LSEAPMVSSLMVSRTLFLSLGGT 116
S LS P ++ VSRT LSLG T
Sbjct: 432 SASLSGMPTGATTKVSRTEALSLGRT 457
>Z92546-1|CAB62953.1| 822|Homo sapiens bK65A6.2 (novel Sushi domain
(SCR repeat) containing protein similar to Mucins)
protein.
Length = 822
Score = 30.3 bits (65), Expect = 6.5
Identities = 17/67 (25%), Positives = 31/67 (46%)
Frame = +3
Query: 150 TIREETIGASDS*VDYEIEFLVEWRHLTSISPRVMNTGSIVEAAVFPKATISRSDTTDLR 329
TI E G ++ + Y E+ +W +L ++ + N+GS + R LR
Sbjct: 191 TITIELWGYEETGMPYSQEWTAKWSYLYPLATHIPNSGSFTFTPKPAPPSYQRWRVGALR 250
Query: 330 VVNSKAY 350
+++SK Y
Sbjct: 251 IIDSKNY 257
>BC033107-1|AAH33107.1| 822|Homo sapiens sushi domain containing 2
protein.
Length = 822
Score = 30.3 bits (65), Expect = 6.5
Identities = 17/67 (25%), Positives = 31/67 (46%)
Frame = +3
Query: 150 TIREETIGASDS*VDYEIEFLVEWRHLTSISPRVMNTGSIVEAAVFPKATISRSDTTDLR 329
TI E G ++ + Y E+ +W +L ++ + N+GS + R LR
Sbjct: 191 TITIELWGYEETGMPYSQEWTAKWSYLYPLATHIPNSGSFTFTPKPAPPSYQRWRVGALR 250
Query: 330 VVNSKAY 350
+++SK Y
Sbjct: 251 IIDSKNY 257
>L19711-1|AAA81779.1| 895|Homo sapiens dystroglycan protein.
Length = 895
Score = 29.9 bits (64), Expect = 8.5
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = -2
Query: 346 ALELTTLRSVVSLLEMVAF--GNTAASTIDPVFITRGDMEVRWRHST 212
AL L + ++L++ +AF G+ STI ITRG + V W ++T
Sbjct: 617 ALVLNDIHKKIALVKKLAFAFGDRNCSTITLQNITRGSIVVEWTNNT 663
>BC014616-1|AAH14616.1| 895|Homo sapiens dystroglycan 1
(dystrophin-associated glycoprotein 1) protein.
Length = 895
Score = 29.9 bits (64), Expect = 8.5
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = -2
Query: 346 ALELTTLRSVVSLLEMVAF--GNTAASTIDPVFITRGDMEVRWRHST 212
AL L + ++L++ +AF G+ STI ITRG + V W ++T
Sbjct: 617 ALVLNDIHKKIALVKKLAFAFGDRNCSTITLQNITRGSIVVEWTNNT 663
>BC012740-1|AAH12740.1| 895|Homo sapiens dystroglycan 1
(dystrophin-associated glycoprotein 1) protein.
Length = 895
Score = 29.9 bits (64), Expect = 8.5
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = -2
Query: 346 ALELTTLRSVVSLLEMVAF--GNTAASTIDPVFITRGDMEVRWRHST 212
AL L + ++L++ +AF G+ STI ITRG + V W ++T
Sbjct: 617 ALVLNDIHKKIALVKKLAFAFGDRNCSTITLQNITRGSIVVEWTNNT 663
>AB209848-1|BAD93085.1| 552|Homo sapiens MutL protein homolog 1
variant protein.
Length = 552
Score = 29.9 bits (64), Expect = 8.5
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = -1
Query: 443 SGWEKAHWVRRNSAGYDTNFHRYQLEWTPDFISFRIDDSEIGRVTPGN 300
SGW + + A Y F + + E D+ S ID+SE+ P +
Sbjct: 460 SGWTEEDGPKEGLAEYIVEFLKKKAEMLADYFSLEIDESEVPGSIPNS 507
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,573,382
Number of Sequences: 237096
Number of extensions: 2992622
Number of successful extensions: 6100
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6094
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7535049140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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