Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13a06r
         (665 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   1.1  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   3.5  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   4.6  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   6.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   8.0  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   8.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.0  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -1

Query: 416 RRNSAGYDTNFHRYQLEW 363
           RR S   D N HR Q+ W
Sbjct: 88  RRQSRSMDLNAHREQMSW 105


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 256 FITRGDMEVRWRHSTK 209
           F+TRGD+ + W    K
Sbjct: 381 FLTRGDLWISWEEGMK 396


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -1

Query: 173 TNGFFPDGVKNPIPKPWWN 117
           T GF     +N + K WWN
Sbjct: 351 TRGFLQPVCQNEMNKWWWN 369


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +3

Query: 297 TISRSDTTDLRVVNSKAYEIWCP 365
           T   S+   +  +  K+YEIW P
Sbjct: 96  TWKSSEFDSINSIRVKSYEIWVP 118


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 68  LPTWNLNVNDGQDASLQVD 12
           +PTW +N+       LQVD
Sbjct: 125 VPTWEVNILKSIVGQLQVD 143


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 556 GKSTLSNPEATKTCSSTVYTLVHRK 482
           GK+T  NP++ K+  + +  LV  K
Sbjct: 384 GKTTEENPKSIKSGDAAIVMLVPSK 408


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -1

Query: 179  GGTNGFFPDGVKNPIPKPWWNNSPMAATDFWN 84
            GG  G  P+G+K P       + P    +FWN
Sbjct: 1136 GGIPG--PNGIKMPSFMEGMPHLPFTPFNFWN 1165


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,831
Number of Sequences: 438
Number of extensions: 5751
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)