Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13a06f
         (597 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-...    28   0.90 
SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb...    28   1.2  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    27   1.6  
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    27   2.7  
SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces p...    26   4.8  
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    25   8.4  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    25   8.4  
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po...    25   8.4  

>SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+,
           L-lysine forming] |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 368

 Score = 28.3 bits (60), Expect = 0.90
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 442 PTNILNPIKSARIRTVHSFSFQYGKVEVRAKMPSGDWL 555
           P N  +P+K   I+  H +  Q G  EV ++ P+G+ L
Sbjct: 80  PENDNSPLKHTHIQFAHCYKNQEGWREVLSRFPAGNGL 117


>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
 Frame = +1

Query: 70  LGVVALISASKACTPSVTTVSGTHAPVTVCSGQLIFADD--FVDFDLEKWQHENTLAGGG 243
           L + A +S +     ++  V  T  P+ V       ADD  F     E W H+ +L   G
Sbjct: 48  LALQADVSKADQIETAIEKVIQTLGPIDVLINNAGLADDTPFEQLSHESWDHDVSLVLRG 107

Query: 244 NWEFQYY 264
           N+  Q Y
Sbjct: 108 NYLTQRY 114


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1261

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 531  RSNFYFTILEAEGMNGANTCTFNGV 457
            ++ +YF +LE EGM+G    T+  +
Sbjct: 1163 KARYYFDLLECEGMSGKEPSTYENM 1187


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/57 (22%), Positives = 31/57 (54%)
 Frame = +1

Query: 91  SASKACTPSVTTVSGTHAPVTVCSGQLIFADDFVDFDLEKWQHENTLAGGGNWEFQY 261
           S+S + +P+ ++VSG      +    L ++D+FV+  +  + +  + + G +  F+Y
Sbjct: 281 SSSASASPTSSSVSGKRGLAWIPGTDLGYSDNFVNKGINWYYNWGSYSSGLSSSFEY 337


>SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 169 LIFADDFVDFDLEKWQHENTLAGGGNWE 252
           +IF  DFVD DL+  QH+      G+WE
Sbjct: 292 MIFQFDFVDLDLDPNQHKYI---EGSWE 316


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +2

Query: 320 PLRPTSSDPHFYIAVA*TLKEAHPPTDALTLNGTVASVLVPPL 448
           P   T   PH Y  +   + E   P+D L+ +  V  + +P L
Sbjct: 157 PSSLTGEKPHLYARIDSAINEPFTPSDRLSPSSLVPLLKLPAL 199


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 932

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 19/70 (27%), Positives = 29/70 (41%)
 Frame = +1

Query: 343  SAFLHSGRLNIEGGAPADRCTNPQWYGCERVGTPTNILNPIKSARIRTVHSFSFQYGKVE 522
            +  + SGR  +     AD  T   +   E + T  ++ N I SAR+  +        +V 
Sbjct: 807  NVLMDSGRGKLLQKMVADAITEEGYDDFETIVTINHLENKIASARLLKLDDEFLVTSEVY 866

Query: 523  VRAKMPSGDW 552
            VR  M  G W
Sbjct: 867  VRLLMHHGLW 876


>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = -1

Query: 495 GMNGANTCTFNGVQNISGGTNTLA-TVPLRVSASVGGCASF 376
           G  GAN C FN  +N+   T  L  T   R   SV   A+F
Sbjct: 518 GFRGANACAFN--ENLYPSTKQLCLTKSFRFGNSVAKYANF 556


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,516,084
Number of Sequences: 5004
Number of extensions: 50906
Number of successful extensions: 139
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)