Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13a06f
         (597 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0753 + 5640233-5640253,5641687-5642499                           30   1.6  
01_07_0107 - 41118897-41120036                                         29   3.7  
03_06_0237 - 32566999-32567086,32567742-32567772,32567832-32569197     28   4.9  
04_04_0166 - 23250473-23250746,23251349-23252025                       28   6.5  
12_01_0445 - 3513733-3513819,3514392-3514613,3514730-3514999,351...    27   8.6  
03_04_0234 + 19121377-19121511,19121680-19122069                       27   8.6  

>06_01_0753 + 5640233-5640253,5641687-5642499
          Length = 277

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +1

Query: 91  SASKACTPSVTTVSGTHAPVTVCSGQLIFADDFVDFDL 204
           SAS+A TP+ ++  G  +P  V S + + +D  VD+ L
Sbjct: 183 SASEASTPACSSSDGAASPSPVSSPETVISDVDVDYSL 220


>01_07_0107 - 41118897-41120036
          Length = 379

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = +1

Query: 79  VALISASKACTPSVTTVSGTHAPVTVCSGQLIFADDFVDFDLEKWQ 216
           V  +S   AC   V  +    AP  +  G  +  D+ V FDLEKWQ
Sbjct: 312 VVEVSQEAACFAFVD-MGAAAAPAVIIGGHQM-EDNLVVFDLEKWQ 355


>03_06_0237 - 32566999-32567086,32567742-32567772,32567832-32569197
          Length = 494

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +1

Query: 430 RVGTPTNILNPIKSARIRTVHSFSFQYGKVEVRAKMPSGDWLWPAI 567
           R+ T   I    K    R ++S   ++G+   R+ MP+G   WPAI
Sbjct: 438 RIRTAPAITGVSKIKHRREIYSSHPRFGRQIARSSMPNGWHPWPAI 483


>04_04_0166 - 23250473-23250746,23251349-23252025
          Length = 316

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 24/83 (28%), Positives = 35/83 (42%)
 Frame = +1

Query: 301 LLYIRPSLTSDQFGSAFLHSGRLNIEGGAPADRCTNPQWYGCERVGTPTNILNPIKSARI 480
           LL+  P   S     A L + R + +G       T P   G     +P  +    + A  
Sbjct: 25  LLFSCPPYRSRPRHRARLAASRSSSDGEGDGGIVTGPAGGGGGVFLSPRALSQRDELAAF 84

Query: 481 RTVHSFSFQYGKVEVRAKMPSGD 549
           R  HSF   +G++ VRA  P+GD
Sbjct: 85  RYAHSFP--HGRLTVRALTPAGD 105


>12_01_0445 - 3513733-3513819,3514392-3514613,3514730-3514999,
            3515033-3517110,3517649-3517976,3519136-3519255,
            3519299-3519352,3520115-3520154,3520344-3520411
          Length = 1088

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 172  IFADDFVDFDLEKWQH 219
            +FAD+  DFDL KW +
Sbjct: 1048 VFADELYDFDLPKWSN 1063


>03_04_0234 + 19121377-19121511,19121680-19122069
          Length = 174

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 335 SSDPHFYIAVA*TLKEAHPPTDALTLNGTVASVLVPP 445
           +SD H  + V  +  +  PP   + + GTV   +VPP
Sbjct: 30  ASDVHKSLLVPVSAVKVKPPPQRIVVKGTVKGCIVPP 66


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,379,656
Number of Sequences: 37544
Number of extensions: 370731
Number of successful extensions: 867
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)