Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13a04f
         (662 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    37   2e-04
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    27   0.16 
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   2.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.0  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 36.7 bits (81), Expect = 2e-04
 Identities = 35/115 (30%), Positives = 53/115 (46%)
 Frame = +3

Query: 291 IAISFKSNRVIEIEDDAFRNIPRLVYLDLSNNKISGQVLRSEIFQGPYEDGIYREIALET 470
           I ++   N +  I+   F+++  L  LDL NN I    + S  F   Y         L T
Sbjct: 338 IVLNLSYNMLTHIDARMFKDLFFLQILDLRNNSIDR--IESNAFLPLYN--------LHT 387

Query: 471 LNLGYNEIHSLDRYLFKYTPNLTRLYLNNNPIEILDHVSILAISSATNLEVLDLS 635
           L L  N++ ++   LF     L RL L+ N I  +D    LA  + ++L+ LDLS
Sbjct: 388 LELSDNKLRTVGAQLFNGLFVLNRLTLSGNAIASIDP---LAFRNCSDLKELDLS 439



 Score = 35.9 bits (79), Expect = 3e-04
 Identities = 28/106 (26%), Positives = 49/106 (46%)
 Frame = +3

Query: 312 NRVIEIEDDAFRNIPRLVYLDLSNNKISGQVLRSEIFQGPYEDGIYREIALETLNLGYNE 491
           N + ++    F  + +L+ L+L+ N++    +    F G         I L  LNL YN 
Sbjct: 295 NGLRDLPKGIFTRLEQLLVLNLAGNRLGSDRVDETTFLGL--------IRLIVLNLSYNM 346

Query: 492 IHSLDRYLFKYTPNLTRLYLNNNPIEILDHVSILAISSATNLEVLD 629
           +  +D  +FK    L  L L NN I+ ++  + L + +   LE+ D
Sbjct: 347 LTHIDARMFKDLFFLQILDLRNNSIDRIESNAFLPLYNLHTLELSD 392



 Score = 35.9 bits (79), Expect = 3e-04
 Identities = 35/118 (29%), Positives = 55/118 (46%)
 Frame = +3

Query: 285 NRIAISFKSNRVIEIEDDAFRNIPRLVYLDLSNNKISGQVLRSEIFQGPYEDGIYREIAL 464
           NR+ +S   N +  I+  AFRN   L  LDLS N+++              D +     L
Sbjct: 410 NRLTLS--GNAIASIDPLAFRNCSDLKELDLSGNELTS-----------VPDALRDLALL 456

Query: 465 ETLNLGYNEIHSLDRYLFKYTPNLTRLYLNNNPIEILDHVSILAISSATNLEVLDLSK 638
           +TL+LG N I +     F+    LT L L  N I    ++S   +    NL++L+L++
Sbjct: 457 KTLDLGENRISNFYNGSFRNLDQLTGLRLIGNDI---GNLSRGMLWDLPNLQILNLAR 511



 Score = 35.5 bits (78), Expect = 5e-04
 Identities = 30/109 (27%), Positives = 54/109 (49%)
 Frame = +3

Query: 312 NRVIEIEDDAFRNIPRLVYLDLSNNKISGQVLRSEIFQGPYEDGIYREIALETLNLGYNE 491
           NR+    + +FRN+ +L  L L  N I G + R  ++  P          L+ LNL  N+
Sbjct: 464 NRISNFYNGSFRNLDQLTGLRLIGNDI-GNLSRGMLWDLPN---------LQILNLARNK 513

Query: 492 IHSLDRYLFKYTPNLTRLYLNNNPIEILDHVSILAISSATNLEVLDLSK 638
           +  ++RY F+    L  + L+ N +  ++ V     +S  +L +L+LS+
Sbjct: 514 VQHVERYAFERNMRLEAIRLDGNFLSDINGV----FTSIASLLLLNLSE 558



 Score = 33.1 bits (72), Expect = 0.002
 Identities = 21/58 (36%), Positives = 32/58 (55%)
 Frame = +3

Query: 462  LETLNLGYNEIHSLDRYLFKYTPNLTRLYLNNNPIEILDHVSILAISSATNLEVLDLS 635
            L+ L+L  N I  L  + F+   +L  LYL NN I  + +++ L + S   LE+L LS
Sbjct: 844  LQILHLEDNRIRELKGFEFERLSHLRELYLQNNLIGFIGNLTFLPLRS---LEILRLS 898


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 474 NLGYNEIHSLDRYLFKYTPNLTRLYLNNNPIE 569
           +L    IH+ + Y + Y  N  +LY N N IE
Sbjct: 84  SLSNKTIHNNNNYKYNYNNNCKKLYYNINYIE 115


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 361 NRGMFLKASSSISITRFDLKLIAILFPGI 275
           N G FLKA  +  +TR D +  +++FP +
Sbjct: 132 NEGQFLKAFVAAVLTRQDTQ--SVIFPPV 158


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +3

Query: 105 PCDISVEDTSNLTLNCSRRDI 167
           P D+SVE   ++ L+C  + +
Sbjct: 716 PTDVSVERNKHVALHCQAQGV 736


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +3

Query: 105 PCDISVEDTSNLTLNCSRRDI 167
           P D+SVE   ++ L+C  + +
Sbjct: 712 PTDVSVERNKHVALHCQAQGV 732


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,357
Number of Sequences: 438
Number of extensions: 3681
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)