Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV13a02r
(741 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK022027-1|BAB13955.1| 234|Homo sapiens protein ( Homo sapiens ... 279 1e-74
AK001440-1|BAA91692.1| 234|Homo sapiens protein ( Homo sapiens ... 279 1e-74
AF346603-1|AAK29084.1| 476|Homo sapiens Sec61 alpha form 2 prot... 279 1e-74
AL831940-1|CAD38592.1| 215|Homo sapiens hypothetical protein pr... 272 9e-73
AK075148-1|BAC11434.1| 170|Homo sapiens protein ( Homo sapiens ... 272 9e-73
AK074928-1|BAC11298.1| 356|Homo sapiens protein ( Homo sapiens ... 272 9e-73
AK074907-1|BAC11283.1| 170|Homo sapiens protein ( Homo sapiens ... 272 9e-73
AF346602-1|AAK29083.1| 476|Homo sapiens Sec61 alpha form 1 prot... 272 9e-73
AF084458-1|AAD39847.1| 476|Homo sapiens sec61 homolog protein. 272 9e-73
AK022640-1|BAB14148.1| 437|Homo sapiens protein ( Homo sapiens ... 163 4e-40
BC026179-1|AAH26179.1| 418|Homo sapiens SEC61A2 protein protein. 161 2e-39
AK096512-1|BAC04807.1| 123|Homo sapiens protein ( Homo sapiens ... 33 1.1
AK125672-1|BAC86239.1| 203|Homo sapiens protein ( Homo sapiens ... 31 4.3
>AK022027-1|BAB13955.1| 234|Homo sapiens protein ( Homo sapiens
cDNA FLJ11965 fis, clone HEMBB1001112, moderately
similar to Homo sapiens sec61 homolog mRNA. ).
Length = 234
Score = 279 bits (683), Expect = 1e-74
Identities = 132/166 (79%), Positives = 142/166 (85%)
Frame = -1
Query: 735 KFSGXFLVNVLGVWADXXXXXXXXXXXXXGLCYYLSPPESLAHIAHDPVHALLYVLFMLG 556
+FSG FLVN+LG WAD GLCYYLSPPES+ I DPVH ++Y++FMLG
Sbjct: 69 RFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVHVVVYIIFMLG 128
Query: 555 SCAFFSKTWIDVSGSSAKDVAKQLKEQQMVMRGHRDNSMIHELNRYIPTAAAFGGLCIGA 376
SCAFFSKTWI+VSGSSAKDVAKQLKEQQMVMRGHRD SM+HELNRYIPTAAAFGGLCIGA
Sbjct: 129 SCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNRYIPTAAAFGGLCIGA 188
Query: 375 LSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQAEMGGMSTLLF 238
LSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQAE+GGM L F
Sbjct: 189 LSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQAEVGGMGALFF 234
>AK001440-1|BAA91692.1| 234|Homo sapiens protein ( Homo sapiens
cDNA FLJ10578 fis, clone NT2RP2003433, highly similar to
PROTEIN TRANSPORT PROTEIN SEC61 ALPHA SUBUNIT. ).
Length = 234
Score = 279 bits (683), Expect = 1e-74
Identities = 132/166 (79%), Positives = 142/166 (85%)
Frame = -1
Query: 735 KFSGXFLVNVLGVWADXXXXXXXXXXXXXGLCYYLSPPESLAHIAHDPVHALLYVLFMLG 556
+FSG FLVN+LG WAD GLCYYLSPPES+ I DPVH ++Y++FMLG
Sbjct: 69 RFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVHVVVYIIFMLG 128
Query: 555 SCAFFSKTWIDVSGSSAKDVAKQLKEQQMVMRGHRDNSMIHELNRYIPTAAAFGGLCIGA 376
SCAFFSKTWI+VSGSSAKDVAKQLKEQQMVMRGHRD SM+HELNRYIPTAAAFGGLCIGA
Sbjct: 129 SCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNRYIPTAAAFGGLCIGA 188
Query: 375 LSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQAEMGGMSTLLF 238
LSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQAE+GGM L F
Sbjct: 189 LSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQAEVGGMGALFF 234
>AF346603-1|AAK29084.1| 476|Homo sapiens Sec61 alpha form 2
protein.
Length = 476
Score = 279 bits (683), Expect = 1e-74
Identities = 132/166 (79%), Positives = 142/166 (85%)
Frame = -1
Query: 735 KFSGXFLVNVLGVWADXXXXXXXXXXXXXGLCYYLSPPESLAHIAHDPVHALLYVLFMLG 556
+FSG FLVN+LG WAD GLCYYLSPPES+ I DPVH ++Y++FMLG
Sbjct: 311 RFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVHVVVYIIFMLG 370
Query: 555 SCAFFSKTWIDVSGSSAKDVAKQLKEQQMVMRGHRDNSMIHELNRYIPTAAAFGGLCIGA 376
SCAFFSKTWI+VSGSSAKDVAKQLKEQQMVMRGHRD SM+HELNRYIPTAAAFGGLCIGA
Sbjct: 371 SCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNRYIPTAAAFGGLCIGA 430
Query: 375 LSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQAEMGGMSTLLF 238
LSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQAE+GGM L F
Sbjct: 431 LSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQAEVGGMGALFF 476
>AL831940-1|CAD38592.1| 215|Homo sapiens hypothetical protein
protein.
Length = 215
Score = 272 bits (667), Expect = 9e-73
Identities = 127/167 (76%), Positives = 142/167 (85%)
Frame = -1
Query: 738 SKFSGXFLVNVLGVWADXXXXXXXXXXXXXGLCYYLSPPESLAHIAHDPVHALLYVLFML 559
++FSG LV++LG W+D GLCYYLSPPES + DPVHA++Y++FML
Sbjct: 49 ARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVLEDPVHAVVYIVFML 108
Query: 558 GSCAFFSKTWIDVSGSSAKDVAKQLKEQQMVMRGHRDNSMIHELNRYIPTAAAFGGLCIG 379
GSCAFFSKTWI+VSGSSAKDVAKQLKEQQMVMRGHR+ SM+HELNRYIPTAAAFGGLCIG
Sbjct: 109 GSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIG 168
Query: 378 ALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQAEMGGMSTLLF 238
ALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQ+E+G M LLF
Sbjct: 169 ALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQSEVGSMGALLF 215
>AK075148-1|BAC11434.1| 170|Homo sapiens protein ( Homo sapiens
cDNA FLJ90667 fis, clone PLACE1005410, highly similar to
Protein transport protein Sec61 alpha subunitisoform 1.
).
Length = 170
Score = 272 bits (667), Expect = 9e-73
Identities = 127/167 (76%), Positives = 142/167 (85%)
Frame = -1
Query: 738 SKFSGXFLVNVLGVWADXXXXXXXXXXXXXGLCYYLSPPESLAHIAHDPVHALLYVLFML 559
++FSG LV++LG W+D GLCYYLSPPES + DPVHA++Y++FML
Sbjct: 4 ARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVLEDPVHAVVYIVFML 63
Query: 558 GSCAFFSKTWIDVSGSSAKDVAKQLKEQQMVMRGHRDNSMIHELNRYIPTAAAFGGLCIG 379
GSCAFFSKTWI+VSGSSAKDVAKQLKEQQMVMRGHR+ SM+HELNRYIPTAAAFGGLCIG
Sbjct: 64 GSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIG 123
Query: 378 ALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQAEMGGMSTLLF 238
ALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQ+E+G M LLF
Sbjct: 124 ALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQSEVGSMGALLF 170
>AK074928-1|BAC11298.1| 356|Homo sapiens protein ( Homo sapiens
cDNA FLJ90447 fis, clone NT2RP3001240, highly similar to
Canis familiaris sec61 homologue mRNA. ).
Length = 356
Score = 272 bits (667), Expect = 9e-73
Identities = 127/167 (76%), Positives = 142/167 (85%)
Frame = -1
Query: 738 SKFSGXFLVNVLGVWADXXXXXXXXXXXXXGLCYYLSPPESLAHIAHDPVHALLYVLFML 559
++FSG LV++LG W+D GLCYYLSPPES + DPVHA++Y++FML
Sbjct: 190 ARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVLEDPVHAVVYIVFML 249
Query: 558 GSCAFFSKTWIDVSGSSAKDVAKQLKEQQMVMRGHRDNSMIHELNRYIPTAAAFGGLCIG 379
GSCAFFSKTWI+VSGSSAKDVAKQLKEQQMVMRGHR+ SM+HELNRYIPTAAAFGGLCIG
Sbjct: 250 GSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIG 309
Query: 378 ALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQAEMGGMSTLLF 238
ALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQ+E+G M LLF
Sbjct: 310 ALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQSEVGSMGALLF 356
>AK074907-1|BAC11283.1| 170|Homo sapiens protein ( Homo sapiens
cDNA FLJ90426 fis, clone NT2RP3000460, highly similar to
Protein transport protein Sec61 alpha subunitisoform 1.
).
Length = 170
Score = 272 bits (667), Expect = 9e-73
Identities = 127/167 (76%), Positives = 142/167 (85%)
Frame = -1
Query: 738 SKFSGXFLVNVLGVWADXXXXXXXXXXXXXGLCYYLSPPESLAHIAHDPVHALLYVLFML 559
++FSG LV++LG W+D GLCYYLSPPES + DPVHA++Y++FML
Sbjct: 4 ARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVLEDPVHAVVYIVFML 63
Query: 558 GSCAFFSKTWIDVSGSSAKDVAKQLKEQQMVMRGHRDNSMIHELNRYIPTAAAFGGLCIG 379
GSCAFFSKTWI+VSGSSAKDVAKQLKEQQMVMRGHR+ SM+HELNRYIPTAAAFGGLCIG
Sbjct: 64 GSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIG 123
Query: 378 ALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQAEMGGMSTLLF 238
ALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQ+E+G M LLF
Sbjct: 124 ALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQSEVGSMGALLF 170
>AF346602-1|AAK29083.1| 476|Homo sapiens Sec61 alpha form 1
protein.
Length = 476
Score = 272 bits (667), Expect = 9e-73
Identities = 127/167 (76%), Positives = 142/167 (85%)
Frame = -1
Query: 738 SKFSGXFLVNVLGVWADXXXXXXXXXXXXXGLCYYLSPPESLAHIAHDPVHALLYVLFML 559
++FSG LV++LG W+D GLCYYLSPPES + DPVHA++Y++FML
Sbjct: 310 ARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVLEDPVHAVVYIVFML 369
Query: 558 GSCAFFSKTWIDVSGSSAKDVAKQLKEQQMVMRGHRDNSMIHELNRYIPTAAAFGGLCIG 379
GSCAFFSKTWI+VSGSSAKDVAKQLKEQQMVMRGHR+ SM+HELNRYIPTAAAFGGLCIG
Sbjct: 370 GSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIG 429
Query: 378 ALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQAEMGGMSTLLF 238
ALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQ+E+G M LLF
Sbjct: 430 ALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQSEVGSMGALLF 476
>AF084458-1|AAD39847.1| 476|Homo sapiens sec61 homolog protein.
Length = 476
Score = 272 bits (667), Expect = 9e-73
Identities = 127/167 (76%), Positives = 142/167 (85%)
Frame = -1
Query: 738 SKFSGXFLVNVLGVWADXXXXXXXXXXXXXGLCYYLSPPESLAHIAHDPVHALLYVLFML 559
++FSG LV++LG W+D GLCYYLSPPES + DPVHA++Y++FML
Sbjct: 310 ARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVLEDPVHAVVYIVFML 369
Query: 558 GSCAFFSKTWIDVSGSSAKDVAKQLKEQQMVMRGHRDNSMIHELNRYIPTAAAFGGLCIG 379
GSCAFFSKTWI+VSGSSAKDVAKQLKEQQMVMRGHR+ SM+HELNRYIPTAAAFGGLCIG
Sbjct: 370 GSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIG 429
Query: 378 ALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQAEMGGMSTLLF 238
ALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQ+E+G M LLF
Sbjct: 430 ALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQSEVGSMGALLF 476
>AK022640-1|BAB14148.1| 437|Homo sapiens protein ( Homo sapiens
cDNA FLJ12578 fis, clone NT2RM4001054, moderately
similar to Homo sapiens sec61 homolog mRNA. ).
Length = 437
Score = 163 bits (397), Expect = 4e-40
Identities = 75/105 (71%), Positives = 84/105 (80%)
Frame = -1
Query: 735 KFSGXFLVNVLGVWADXXXXXXXXXXXXXGLCYYLSPPESLAHIAHDPVHALLYVLFMLG 556
+FSG FLVN+LG WAD GLCYYLSPPES+ I DPVH ++Y++FMLG
Sbjct: 311 RFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVHVVVYIIFMLG 370
Query: 555 SCAFFSKTWIDVSGSSAKDVAKQLKEQQMVMRGHRDNSMIHELNR 421
SCAFFSKTWI+VSGSSAKDVAKQLKEQQMVMRGHRD SM+HELNR
Sbjct: 371 SCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNR 415
>BC026179-1|AAH26179.1| 418|Homo sapiens SEC61A2 protein protein.
Length = 418
Score = 161 bits (392), Expect = 2e-39
Identities = 74/104 (71%), Positives = 83/104 (79%)
Frame = -1
Query: 735 KFSGXFLVNVLGVWADXXXXXXXXXXXXXGLCYYLSPPESLAHIAHDPVHALLYVLFMLG 556
+FSG FLVN+LG WAD GLCYYLSPPES+ I DPVH ++Y++FMLG
Sbjct: 311 RFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVHVVVYIIFMLG 370
Query: 555 SCAFFSKTWIDVSGSSAKDVAKQLKEQQMVMRGHRDNSMIHELN 424
SCAFFSKTWI+VSGSSAKDVAKQLKEQQMVMRGHRD SM+HELN
Sbjct: 371 SCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELN 414
>AK096512-1|BAC04807.1| 123|Homo sapiens protein ( Homo sapiens
cDNA FLJ39193 fis, clone OCBBF2004866. ).
Length = 123
Score = 33.1 bits (72), Expect = 1.1
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = +2
Query: 245 SVLMPPISACSLTKISKYW*MMVT----ASSIPVPEPMAPRKSASTDRAPMHSPPNA 403
S+ +PP+ + K+ W + + S P+P P+ ++S + R +H PP A
Sbjct: 16 SLCLPPLESGEAWKVPAAWVLQMAPAKATSHSPLPSPVTQQQSRGSSREALHVPPKA 72
>AK125672-1|BAC86239.1| 203|Homo sapiens protein ( Homo sapiens
cDNA FLJ43684 fis, clone TBAES2001492. ).
Length = 203
Score = 31.1 bits (67), Expect = 4.3
Identities = 17/34 (50%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Frame = +3
Query: 336 RSRWPRGSRPALTEPRCTVLRT---RPPSGCSGS 428
RS WP GSRP + P T T P S CSGS
Sbjct: 26 RSWWPLGSRPLASVPSTTWAPTPSASPSSSCSGS 59
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,647,499
Number of Sequences: 237096
Number of extensions: 2118543
Number of successful extensions: 6791
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 6314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6790
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8847149012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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