Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV13a02f
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.02c |sec61||translocon alpha subunit Sec61|Schizosacchar...   207   9e-55
SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog |Schi...   106   3e-24
SPAC589.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    30   0.32 
SPBC1711.08 |||chaperone activator Aha1 |Schizosaccharomyces pom...    27   1.7  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    27   2.3  
SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.0  
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac...    26   5.2  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    25   6.9  
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma...    25   9.1  
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   9.1  
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni...    25   9.1  

>SPBC354.02c |sec61||translocon alpha subunit
           Sec61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 479

 Score =  207 bits (506), Expect = 9e-55
 Identities = 91/159 (57%), Positives = 125/159 (78%), Gaps = 1/159 (0%)
 Frame = +2

Query: 161 IKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPF 340
           ++FL+++KPF   LPEIA PERK+ F++K+LWT +TL IFLV  Q+PL+GI+SSDS+DP 
Sbjct: 4   LRFLDLVKPFAPFLPEIAAPERKVPFKQKMLWTGVTLLIFLVMSQVPLYGIVSSDSSDPL 63

Query: 341 YWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVG-DTPKDRALFNGAQKLFGM 517
            W+R+ILA+NRGTLMELGISPIVTS +++QLL G+++IEV  +   DR ++   QK   +
Sbjct: 64  LWLRMILAANRGTLMELGISPIVTSSMLVQLLVGSQLIEVNMELKSDREMYQLVQKFLAI 123

Query: 518 VITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLFVAGL 634
           +I  GQA  YV+TGMYG P ++GAG+CLL+I+QL  A L
Sbjct: 124 IIAFGQATAYVLTGMYGRPQDLGAGICLLLILQLAAASL 162


>SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score =  106 bits (254), Expect = 3e-24
 Identities = 54/160 (33%), Positives = 93/160 (58%), Gaps = 1/160 (0%)
 Frame = +2

Query: 158 GIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADP 337
           G +F+  IKP  S+LPE+  P+  ++  EK+ W A  + ++ +   IP++G   +D+ DP
Sbjct: 3   GARFINFIKPLSSLLPEVEGPKTHLELVEKLGWMAGCVVVYQILSIIPVYGAEKTDTLDP 62

Query: 338 FYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVG-DTPKDRALFNGAQKLFG 514
               RV+  S+   LM  G++PI  S  ++Q+LA  K I V  +   DR LF  AQK+  
Sbjct: 63  INNFRVLDGSSASGLMITGLAPIYLSSFLLQILASKKKIAVNFNLIIDRVLFQNAQKVVS 122

Query: 515 MVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLFVAGL 634
            ++ +  A+ YV +G YG  S++G    +++I+Q+F+ G+
Sbjct: 123 ALLYLILAVTYVSSGYYGSFSDLGIFRFIMLILQIFLPGI 162


>SPAC589.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 346

 Score = 29.9 bits (64), Expect = 0.32
 Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
 Frame = -3

Query: 507 NFCAPLNKALSFGVSPTS-MILAPASNCMISPDVTIGEIPSSINV---PLFDARITRIQ* 340
           + CA +NKAL  G+  TS    A    C   PD  I  +  S  V   PL + RI  ++ 
Sbjct: 104 SLCAAINKALDAGIPITSPAFYADEKQC---PDTLIASVFDSATVEKIPLLEERIRIMRA 160

Query: 339 KGSALSD 319
            G  L D
Sbjct: 161 SGRVLVD 167


>SPBC1711.08 |||chaperone activator Aha1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 336

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 634 KTGHKQLYDNEEAHSGTNFTGFTIHSSHYINN-SLTNSNHHT 512
           +T    +Y + E H+G    G  +HSS   NN S T+SN  T
Sbjct: 144 QTHGDDVYLSTEEHNGNAARGLPVHSSFKQNNSSQTSSNKGT 185


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +2

Query: 161  IKFLEVI-KPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMS 319
            I+FL+   KP+ S    +    R++ +  K  WT   + I L+    PLFGI S
Sbjct: 1055 IRFLDPPPKPYLSYKMYLNDFTRQLHYIPKGSWTVQIVAIVLLILLPPLFGIFS 1108


>SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 340

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = -3

Query: 387 SINVPLFDARITRIQ*KGSALSDDIIPNKGIWQHTKKINNVIAVHNTFSRN*ILRSGFAI 208
           S+ + LFD  I+ +    S +SD  IP K      +++ N  +   T+S N + +S    
Sbjct: 273 SLLLGLFDKSISMLNCHSSKISDGDIPYKSHQVFLQELQNKYSEIKTYSSNKLNKSSIKS 332

Query: 207 S 205
           S
Sbjct: 333 S 333


>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
           Rad4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 648

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 210 ISGNILQNGLITSKNFIPILIYC 142
           + G  L +GL+  K+F+P L  C
Sbjct: 83  VQGEDLDDGLLVDKHFLPTLFKC 105


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = -3

Query: 510 NNFCAPLNKALSFGVSPTSMILAPASNCMISPDVTIGEIPSSINVPLFDARITRIQ 343
           N  C   +K     + P ++I +P+S    S ++   + PSS+NV   + R+  +Q
Sbjct: 368 NGLCRNDSKCRFLMILPETIIKSPSSFIGDSYNIANIDPPSSMNVQSSEFRVGEVQ 423


>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 899

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +3

Query: 39  LFSVKKSYWSVINEQKLNGY*RIDQLI 119
           L S+ K+ W+V++E++  GY  + +LI
Sbjct: 3   LQSLVKALWNVLHEEESEGYPDLTELI 29


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -3

Query: 423 ISPDVTIGEIPSSINVPLFDA 361
           IS ++T GE+PS  NVP  +A
Sbjct: 414 ISANMTTGEMPSMTNVPAGNA 434


>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
           Cct1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -3

Query: 306 NKGIWQHTKKINNVIAVHNTFSRN*ILRSGFAISGNILQNGLIT 175
           +KG  ++  K  N++  H   SR  +L  G+A++  I    + T
Sbjct: 189 SKGETRYPVKAVNILKAHGKSSRESVLVKGYALNCTIASQAMKT 232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,639,674
Number of Sequences: 5004
Number of extensions: 53627
Number of successful extensions: 140
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)