Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV13a01r
(768 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr ... 29 0.97
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa... 27 3.0
SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid phospho... 27 3.0
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 27 3.0
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 5.2
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 26 5.2
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 26 5.2
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc... 26 6.8
SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo... 25 9.0
SPBC17G9.12c |||conserved fungal protein|Schizosaccharomyces pom... 25 9.0
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 9.0
>SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 450
Score = 28.7 bits (61), Expect = 0.97
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = -2
Query: 542 NIVDEPVEKTXEEIENDSEVGSISWVEYPAELDEDGNGLV 423
N++++ K E + S +G+I P +DED N ++
Sbjct: 89 NLIEQETAKNKEMLNVVSSIGNIVHDSVPVSMDEDNNEII 128
>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 27.1 bits (57), Expect = 3.0
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 109 RIHKLLVXKYKRINYLYKKCYLLNTEKL 192
R+ L++ K + IN+ ++C L TEK+
Sbjct: 284 RLESLILEKQEEINFWKQRCRALETEKI 311
>SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid
phospholipase C |Schizosaccharomyces pombe|chr
2|||Manual
Length = 424
Score = 27.1 bits (57), Expect = 3.0
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -2
Query: 305 PIVENSQSEYPGKRYPDATWR 243
PI+E+S ++YP P A WR
Sbjct: 89 PIIESSMNKYPLNGRPQAFWR 109
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 27.1 bits (57), Expect = 3.0
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = -2
Query: 407 IEAQPEDLEKAQLVDLPVENVAEPEDLSPVQVVXPIVENSQSEYPGKRY 261
+EA+ E + + DLP +VA PE++ V + P+ ++ E R+
Sbjct: 219 MEAEAEAVTLEMIGDLPFAHVAPPENVLFVCKLNPVTQDEDLELIFSRF 267
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.2 bits (55), Expect = 5.2
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +1
Query: 352 STGRSTSWAFSKSSGCASIGRSTITSPFPSSSNSAGYSTQL 474
S+ STS S SS +S ST ++ SSS+S+ +S+ L
Sbjct: 281 SSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTL 321
Score = 25.8 bits (54), Expect = 6.8
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +1
Query: 343 ATFSTGRSTSWAFSKSSGCASIGRSTITSPFPSSSNSAGYS 465
+T S+ STS + S SS ++ S+ +S SSS+S+ S
Sbjct: 242 STSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSS 282
Score = 25.8 bits (54), Expect = 6.8
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 343 ATFSTGRSTSWAFSKSSGCASIGRSTITSPFPSSSNSAGYST 468
+T S+ +S+S S S +S ST+TS SSS A S+
Sbjct: 357 STTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSS 398
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 26.2 bits (55), Expect = 5.2
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = -2
Query: 404 EAQPEDLEKAQLVDLPVENVAEPEDLSPVQVVXPIVENSQSE---YPGKRYPDA 252
EA E+ + D VE ++P DL+ + + NSQ E GK Y D+
Sbjct: 11 EAPLEENSPPRFFDSDVEADSKPNDLTAANSIVDLKTNSQHENANAAGKEYGDS 64
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 26.2 bits (55), Expect = 5.2
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +1
Query: 352 STGRSTSWAFSKSSGCASIGRSTITSPFPSSSNSAGYST 468
S+ S++ + S SS +S +T TSP SSS+S+ S+
Sbjct: 129 SSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSS 167
>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 735
Score = 25.8 bits (54), Expect = 6.8
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = -2
Query: 371 LVDLPVENVAEPEDLSP--VQVVXPIVENSQSEYPGKR 264
L+DL +VAEP D P QV V++S S +P +
Sbjct: 429 LMDLASLSVAEPRDSQPSVSQVNDTFVKSSDSTFPSSQ 466
>SPAC15A10.06 |||CPA1 sodium ion/proton
antiporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 25.4 bits (53), Expect = 9.0
Identities = 9/35 (25%), Positives = 21/35 (60%)
Frame = -2
Query: 506 EIENDSEVGSISWVEYPAELDEDGNGLVIVDLPIE 402
++++D+E+G + W + P E D + + + + D E
Sbjct: 457 DVDSDTEIGMLPWQQSP-EFDLENSAMELSDASAE 490
>SPBC17G9.12c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 274
Score = 25.4 bits (53), Expect = 9.0
Identities = 11/54 (20%), Positives = 27/54 (50%)
Frame = -2
Query: 584 DAPVEDADLQVAPVNIVDEPVEKTXEEIENDSEVGSISWVEYPAELDEDGNGLV 423
D+P + LQ++P++I+ +K + + +V + E+P + G ++
Sbjct: 206 DSPTDFGCLQISPISILMRSNQKYYDILSRFEDVQLVDISEFPVQKAVPGKKII 259
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.4 bits (53), Expect = 9.0
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +1
Query: 352 STGRSTSWAFSKSSGCASIGRSTITSPFPSSSNSAGYSTQLIEP 483
S+ STS + S SS ++ ++ +SP SS+ + ST L P
Sbjct: 585 SSPSSTSLSISSSSTSSTFSSASTSSPSSISSSISSSSTILSSP 628
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,598,052
Number of Sequences: 5004
Number of extensions: 48879
Number of successful extensions: 164
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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