Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12p18f
(456 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U70136-1|AAB09089.1| 1404|Homo sapiens megakaryocyte stimulating... 30 4.3
M86852-1|AAC12785.1| 305|Homo sapiens peroxisome assembly facto... 30 4.3
M85038-1|AAA60141.1| 305|Homo sapiens peroxisomal membrane prot... 30 4.3
BC093043-1|AAH93043.1| 305|Homo sapiens peroxisomal membrane pr... 30 4.3
BC005375-1|AAH05375.1| 305|Homo sapiens peroxisomal membrane pr... 30 4.3
BC000661-1|AAH00661.1| 305|Homo sapiens peroxisomal membrane pr... 30 4.3
AL133553-1|CAC36090.1| 1404|Homo sapiens proteoglycan 4 protein. 30 4.3
AK131434-1|BAD18580.1| 933|Homo sapiens protein ( Homo sapiens ... 30 4.3
AF133826-1|AAF97687.1| 305|Homo sapiens 35 kDa peroxisomal memb... 30 4.3
AY219181-1|AAO60072.1| 4243|Homo sapiens fibrocystin L protein. 29 7.6
AY196299-1|AAO34685.1| 540|Homo sapiens phosphodiesterase PDE9A... 29 10.0
>U70136-1|AAB09089.1| 1404|Homo sapiens megakaryocyte stimulating
factor protein.
Length = 1404
Score = 29.9 bits (64), Expect = 4.3
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = -1
Query: 456 STTRLPLLA--TANSLPKMVASPLTATEEALSLGRVRSTLNFDLKMLKVTSLTTTLLAP 286
+TT P + TA + K S +TAT +V ST D K+T+L TT LAP
Sbjct: 930 TTTAAPKMTKETATTTEKTTESKITATTT-----QVTSTTTQDTTPFKITTLKTTTLAP 983
>M86852-1|AAC12785.1| 305|Homo sapiens peroxisome assembly factor-1
protein.
Length = 305
Score = 29.9 bits (64), Expect = 4.3
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = -1
Query: 369 SLGRVRSTLNFDLKMLKVTSLTTTLLAPSRAKWATVPDAL 250
S G+V+ +NF + +LK+ L L+ R K+AT+ + L
Sbjct: 131 SFGKVKQCVNFVIGLLKLGGLINFLIFLQRGKFATLTERL 170
>M85038-1|AAA60141.1| 305|Homo sapiens peroxisomal membrane protein
protein.
Length = 305
Score = 29.9 bits (64), Expect = 4.3
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = -1
Query: 369 SLGRVRSTLNFDLKMLKVTSLTTTLLAPSRAKWATVPDAL 250
S G+V+ +NF + +LK+ L L+ R K+AT+ + L
Sbjct: 131 SFGKVKQCVNFVIGLLKLGGLINFLIFLQRGKFATLTERL 170
>BC093043-1|AAH93043.1| 305|Homo sapiens peroxisomal membrane
protein 3, 35kDa (Zellweger syndrome) protein.
Length = 305
Score = 29.9 bits (64), Expect = 4.3
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = -1
Query: 369 SLGRVRSTLNFDLKMLKVTSLTTTLLAPSRAKWATVPDAL 250
S G+V+ +NF + +LK+ L L+ R K+AT+ + L
Sbjct: 131 SFGKVKQCVNFVIGLLKLGGLINFLIFLQRGKFATLTERL 170
>BC005375-1|AAH05375.1| 305|Homo sapiens peroxisomal membrane
protein 3, 35kDa (Zellweger syndrome) protein.
Length = 305
Score = 29.9 bits (64), Expect = 4.3
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = -1
Query: 369 SLGRVRSTLNFDLKMLKVTSLTTTLLAPSRAKWATVPDAL 250
S G+V+ +NF + +LK+ L L+ R K+AT+ + L
Sbjct: 131 SFGKVKQCVNFVIGLLKLGGLINFLIFLQRGKFATLTERL 170
>BC000661-1|AAH00661.1| 305|Homo sapiens peroxisomal membrane
protein 3, 35kDa (Zellweger syndrome) protein.
Length = 305
Score = 29.9 bits (64), Expect = 4.3
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = -1
Query: 369 SLGRVRSTLNFDLKMLKVTSLTTTLLAPSRAKWATVPDAL 250
S G+V+ +NF + +LK+ L L+ R K+AT+ + L
Sbjct: 131 SFGKVKQCVNFVIGLLKLGGLINFLIFLQRGKFATLTERL 170
>AL133553-1|CAC36090.1| 1404|Homo sapiens proteoglycan 4 protein.
Length = 1404
Score = 29.9 bits (64), Expect = 4.3
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = -1
Query: 456 STTRLPLLA--TANSLPKMVASPLTATEEALSLGRVRSTLNFDLKMLKVTSLTTTLLAP 286
+TT P + TA + K S +TAT +V ST D K+T+L TT LAP
Sbjct: 930 TTTAAPKMTKETATTTEKTTESKITATTT-----QVTSTTTQDTTPFKITTLKTTTLAP 983
>AK131434-1|BAD18580.1| 933|Homo sapiens protein ( Homo sapiens
cDNA FLJ16561 fis, clone SYNOV4003981, moderately
similar to Homo sapiens proteoglycan 4, (megakaryocyte
stimulating ).
Length = 933
Score = 29.9 bits (64), Expect = 4.3
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = -1
Query: 456 STTRLPLLA--TANSLPKMVASPLTATEEALSLGRVRSTLNFDLKMLKVTSLTTTLLAP 286
+TT P + TA + K S +TAT +V ST D K+T+L TT LAP
Sbjct: 459 TTTAAPKMTKETATTTEKTTESKITATTT-----QVTSTTTQDTTPFKITTLKTTTLAP 512
>AF133826-1|AAF97687.1| 305|Homo sapiens 35 kDa peroxisomal
membrane protein protein.
Length = 305
Score = 29.9 bits (64), Expect = 4.3
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = -1
Query: 369 SLGRVRSTLNFDLKMLKVTSLTTTLLAPSRAKWATVPDAL 250
S G+V+ +NF + +LK+ L L+ R K+AT+ + L
Sbjct: 131 SFGKVKQCVNFVIGLLKLGGLINFLIFLQRGKFATLTERL 170
>AY219181-1|AAO60072.1| 4243|Homo sapiens fibrocystin L protein.
Length = 4243
Score = 29.1 bits (62), Expect = 7.6
Identities = 26/80 (32%), Positives = 41/80 (51%)
Frame = +2
Query: 203 IEKAEGDYTFPISDIFSASGTVAHLALEGASNVVVNDVTFNILRSKFSVDLTLPKLSASS 382
I++ DYT + +I S +GT A A E S V D++ ++ ++V LT P ++A
Sbjct: 2040 IDRLRSDYTTLLCEIPSNNGTGAEQACE-VSVVNGKDLSQSMTPFTYAVSLT-PLITA-- 2095
Query: 383 VAVNGEATIFGRELAVASSG 442
V+ +T G L V SG
Sbjct: 2096 VSPKRGSTAGGTRLTVVGSG 2115
>AY196299-1|AAO34685.1| 540|Homo sapiens phosphodiesterase PDE9A5
protein.
Length = 540
Score = 28.7 bits (61), Expect = 10.0
Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Frame = -1
Query: 456 STTRLPLLATANSLPKMVASPLTATEEAL-SLGRVRSTLNFDLKMLKVTSLTTTLLAPSR 280
S+ + L A LP+ L T++A+ S+ + +++ TSL L PS+
Sbjct: 32 SSDIMDLFCIATGLPRNTTISLLTTDDAMVSIDPTMPANSERNELILYTSLRNLLFLPSK 91
Query: 279 AKWATVPDALKMSEIGKV*SPSAFSM 202
WA+ +++ G + AF +
Sbjct: 92 ESWASHQHSVQSETCGHQATLRAFKI 117
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,069,761
Number of Sequences: 237096
Number of extensions: 1136433
Number of successful extensions: 2855
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2855
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3815180866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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