Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12p14f
(412 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92834-4|CAB07387.1| 117|Caenorhabditis elegans Hypothetical pr... 161 2e-40
AL132904-23|CAC35839.2| 312|Caenorhabditis elegans Hypothetical... 31 0.25
AL132904-7|CAC35838.1| 430|Caenorhabditis elegans Hypothetical ... 31 0.25
Z69634-3|CAA93454.4| 553|Caenorhabditis elegans Hypothetical pr... 28 2.3
AL110479-1|CAB60310.2| 311|Caenorhabditis elegans Hypothetical ... 28 2.3
AL032635-6|CAE18002.1| 193|Caenorhabditis elegans Hypothetical ... 27 5.3
AL032635-5|CAB63375.1| 260|Caenorhabditis elegans Hypothetical ... 27 5.3
Z81491-2|CAB04020.1| 181|Caenorhabditis elegans Hypothetical pr... 27 7.0
U39850-2|AAA81056.1| 451|Caenorhabditis elegans Hypothetical pr... 26 9.2
DQ641631-1|ABG29106.1| 451|Caenorhabditis elegans sex determini... 26 9.2
>Z92834-4|CAB07387.1| 117|Caenorhabditis elegans Hypothetical
protein F39B2.6 protein.
Length = 117
Score = 161 bits (391), Expect = 2e-40
Identities = 73/98 (74%), Positives = 80/98 (81%)
Frame = +2
Query: 44 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 223
MT KRRN GR K RGHV +RCTNC RC PKDKAIKKFV+RNIVEAAAVRDI DAS Y
Sbjct: 1 MTFKRRNHGRNKKNRGHVAFIRCTNCGRCCPKDKAIKKFVVRNIVEAAAVRDIGDASAYT 60
Query: 224 MFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPP 337
+ LPKLY KLHYC++CAIHSKVVRNRS++ RR R PP
Sbjct: 61 QYALPKLYHKLHYCIACAIHSKVVRNRSREARRDRNPP 98
>AL132904-23|CAC35839.2| 312|Caenorhabditis elegans Hypothetical
protein Y111B2A.10b protein.
Length = 312
Score = 31.5 bits (68), Expect = 0.25
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Frame = +2
Query: 92 HVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQL-PKLYAKLHYCV 268
H+K ++C NC+ +K+++ +IR+ E A ++ A +L P K H
Sbjct: 80 HLKEIQCDNCSLVFQSEKSLQSHIIRHHQEDADELEVWKAPCSICKELFPSTSVKTHEWY 139
Query: 269 SCAIHSKVV-RNRSKKDRRIRTPPKS 343
C K++ + R K ++++ P S
Sbjct: 140 -CKNREKIIEKQRVSKILKVQSLPSS 164
>AL132904-7|CAC35838.1| 430|Caenorhabditis elegans Hypothetical
protein Y111B2A.10a protein.
Length = 430
Score = 31.5 bits (68), Expect = 0.25
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Frame = +2
Query: 92 HVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQL-PKLYAKLHYCV 268
H+K ++C NC+ +K+++ +IR+ E A ++ A +L P K H
Sbjct: 198 HLKEIQCDNCSLVFQSEKSLQSHIIRHHQEDADELEVWKAPCSICKELFPSTSVKTHEWY 257
Query: 269 SCAIHSKVV-RNRSKKDRRIRTPPKS 343
C K++ + R K ++++ P S
Sbjct: 258 -CKNREKIIEKQRVSKILKVQSLPSS 282
>Z69634-3|CAA93454.4| 553|Caenorhabditis elegans Hypothetical
protein B0001.5 protein.
Length = 553
Score = 28.3 bits (60), Expect = 2.3
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +1
Query: 259 LLRVMRHPQQSCQEQIEERQKNPYSSQE*LP*GHVTSTGSAK 384
++ V + P +S ++ + QKN Y+S E GH TS+ +A+
Sbjct: 374 VINVYKEPSRSHANELYDSQKNQYTSHE----GHSTSSPTAE 411
>AL110479-1|CAB60310.2| 311|Caenorhabditis elegans Hypothetical
protein Y105C5B.1 protein.
Length = 311
Score = 28.3 bits (60), Expect = 2.3
Identities = 17/41 (41%), Positives = 20/41 (48%)
Frame = -1
Query: 157 LFDGLVLWHAPRAVCASHGFNVTTSMLGASSITALTSHVSN 35
L DGLV W+ R V A + T L A + L HVSN
Sbjct: 2 LMDGLV-WNGNREVSAGRLDTLNTFFLNALELILLIIHVSN 41
>AL032635-6|CAE18002.1| 193|Caenorhabditis elegans Hypothetical
protein Y51A2A.11 protein.
Length = 193
Score = 27.1 bits (57), Expect = 5.3
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +2
Query: 35 VRNMTRKRRNGGRAKHGRGHVKAVRCTNCARCVP 136
+R + K+ +G A G ++ RC N A C P
Sbjct: 83 IRALINKKVSGAHAVTWIGGLRKARCVNVAACAP 116
>AL032635-5|CAB63375.1| 260|Caenorhabditis elegans Hypothetical
protein Y51A2A.7 protein.
Length = 260
Score = 27.1 bits (57), Expect = 5.3
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +2
Query: 35 VRNMTRKRRNGGRAKHGRGHVKAVRCTNCARCVP 136
+R + K+ +G A G ++ RC N A C P
Sbjct: 150 IRALINKKVSGAHAVTWIGGLRKARCVNVAACAP 183
>Z81491-2|CAB04020.1| 181|Caenorhabditis elegans Hypothetical
protein D1086.2 protein.
Length = 181
Score = 26.6 bits (56), Expect = 7.0
Identities = 16/66 (24%), Positives = 31/66 (46%)
Frame = +2
Query: 170 NIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPPKSNF 349
N++ +RD N + ++L + L YC+ +++ V NR ++T KS
Sbjct: 82 NVITCKKLRDKNRNVIKQCYELDLVGTPLSYCIQRKLNADKVANRC-----VKTYLKSKD 136
Query: 350 PRDMSR 367
R++ R
Sbjct: 137 TRELKR 142
>U39850-2|AAA81056.1| 451|Caenorhabditis elegans Hypothetical
protein F52C9.7 protein.
Length = 451
Score = 26.2 bits (55), Expect = 9.2
Identities = 19/87 (21%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Frame = +2
Query: 137 KDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKVVRNR---S 307
K +++K +I++ AV+ + + P +L + + SK +++ S
Sbjct: 67 KTSSLQKDIIKSEDPFVAVKVREETKRREIMDNPLTKMRLQAALKSMMTSKAEKSKEKKS 126
Query: 308 KKDRRIRTPPKSNFPRDMSRPQAVQRK 388
KKD++ + +S+ D S + V+RK
Sbjct: 127 KKDKKKKKKKRSSSSSDESSDERVERK 153
>DQ641631-1|ABG29106.1| 451|Caenorhabditis elegans sex determining
protein MOG-3 protein.
Length = 451
Score = 26.2 bits (55), Expect = 9.2
Identities = 19/87 (21%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Frame = +2
Query: 137 KDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKVVRNR---S 307
K +++K +I++ AV+ + + P +L + + SK +++ S
Sbjct: 67 KTSSLQKDIIKSEDPFVAVKVREETKRREIMDNPLTKMRLQAALKSMMTSKAEKSKEKKS 126
Query: 308 KKDRRIRTPPKSNFPRDMSRPQAVQRK 388
KKD++ + +S+ D S + V+RK
Sbjct: 127 KKDKKKKKKKRSSSSSDESSDERVERK 153
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,021,494
Number of Sequences: 27780
Number of extensions: 167479
Number of successful extensions: 453
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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