Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12p09f
         (566 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo...   167   7e-43
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy...    75   6e-15
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar...    75   7e-15
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar...    72   5e-14
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit...    34   0.017
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ...    32   0.051
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||...    31   0.089
SPAC23H4.07c |srp102||signal recognition particle receptor beta ...    29   0.63 
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    27   1.5  
SPCC70.07c |tmp1|tmp|thymidylate kinase Tmp1|Schizosaccharomyces...    27   1.5  
SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit Caf16|Schizos...    27   1.9  
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    27   1.9  
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl...    27   2.5  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    26   3.4  
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa...    26   3.4  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    26   4.4  
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi...    25   7.7  
SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyce...    25   7.7  

>SPBC31F10.06c |sar1||ADP-ribosylation factor
           Sar1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 190

 Score =  167 bits (407), Expect = 7e-43
 Identities = 77/105 (73%), Positives = 87/105 (82%)
 Frame = +3

Query: 252 MFILDWFTGVLGFLGLWKKSGKLLFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELS 431
           MFI++WF   L  LGL  K  K+LFLGLDNAGKTTLLHMLK+DRLA   PTLHPTSEEL+
Sbjct: 1   MFIINWFYDALAMLGLVNKHAKMLFLGLDNAGKTTLLHMLKNDRLAVMQPTLHPTSEELA 60

Query: 432 IGSMRFTTFDLGGHQQARRVWRDYFPAVDAIVFLVDACDRPRLPE 566
           IG++RFTTFDLGGHQQARR+WRDYFP V+ IV+LVD CD  RL E
Sbjct: 61  IGNVRFTTFDLGGHQQARRLWRDYFPEVNGIVYLVDCCDFERLSE 105


>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 180

 Score = 75.4 bits (177), Expect = 6e-15
 Identities = 34/88 (38%), Positives = 54/88 (61%)
 Frame = +3

Query: 303 KKSGKLLFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELSIGSMRFTTFDLGGHQQA 482
           K+  ++L +GLD AGKTT+L+ LK   +   +PT+    E +   ++ FT +D+GG  + 
Sbjct: 15  KREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYRNISFTVWDVGGQDKI 74

Query: 483 RRVWRDYFPAVDAIVFLVDACDRPRLPE 566
           R +WR YF     I+F+VD+ DR R+ E
Sbjct: 75  RPLWRHYFQNTQGIIFVVDSNDRERISE 102


>SPAC22F3.05c |alp41||ADP-ribosylation factor
           Alp41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 186

 Score = 74.9 bits (176), Expect = 7e-15
 Identities = 35/90 (38%), Positives = 57/90 (63%)
 Frame = +3

Query: 297 LWKKSGKLLFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELSIGSMRFTTFDLGGHQ 476
           L ++  ++L LGLDNAGKTT+L  L ++ + +  PT       L +  +RFT +D+GG +
Sbjct: 12  LKEREVRVLLLGLDNAGKTTILKCLLNEDVNEVSPTFGFQIRTLEVEGLRFTIWDIGGQK 71

Query: 477 QARRVWRDYFPAVDAIVFLVDACDRPRLPE 566
             R  W++YF + +AI+++VD+ D  RL E
Sbjct: 72  TLRNFWKNYFESTEAIIWVVDSLDDLRLEE 101


>SPBC1539.08 |||ADP-ribosylation factor, Arf
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 184

 Score = 72.1 bits (169), Expect = 5e-14
 Identities = 32/87 (36%), Positives = 54/87 (62%)
 Frame = +3

Query: 306 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELSIGSMRFTTFDLGGHQQAR 485
           K  ++L LGLD AGKTT+L+ LK ++    +PT+    E ++  +++F  +D+GG  + R
Sbjct: 20  KEMRILMLGLDAAGKTTILYKLKLNQSVVTIPTVGFNVETVTYKNIKFNVWDVGGQDKIR 79

Query: 486 RVWRDYFPAVDAIVFLVDACDRPRLPE 566
            +WR YF     ++F+VD+ D  R+ E
Sbjct: 80  PLWRHYFTGTKGLIFVVDSADSNRISE 106


>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
           Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 354

 Score = 33.9 bits (74), Expect = 0.017
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = +3

Query: 375 DDRLAQHVPTLHPTSEELSIGSMRFTTFDLGGHQQARRVWRDYFPAVDAIVFLVDACD 548
           DD L     TL  +    ++  ++   FD+GG +  RR W   F  V++I+F V   D
Sbjct: 170 DDILRSRNSTLGISEISFTLDHLQIRMFDVGGQRTERRKWIYCFENVNSIIFCVSLND 227


>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score = 32.3 bits (70), Expect = 0.051
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +3

Query: 378 DRLAQHVPTLHPTSEELSIGSMRFTTFDLGGHQQARRVWRDYFPAVDAIVFLV 536
           D L   + T   + E   +    +  FD+GG +  RR W   F  V A++FLV
Sbjct: 213 DILHCRIKTTGISEETFLLNRHHYRFFDVGGQRSERRKWIHCFENVTALLFLV 265


>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 203

 Score = 31.5 bits (68), Expect = 0.089
 Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
 Frame = +3

Query: 315 KLLFLGLDNAGKTTLLHMLKDDRLAQ-HVPTLHPTSE----ELSIGSMRFTTFDLGGHQQ 479
           KLL +G    GK+ LL    DD   + ++ T+    +    EL   +++   +D  G ++
Sbjct: 10  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQER 69

Query: 480 ARRVWRDYFPAVDAIVFLVDACDR 551
            R +   Y+     I+ + D  D+
Sbjct: 70  FRTITSSYYRGAHGIIIVYDVTDQ 93


>SPAC23H4.07c |srp102||signal recognition particle receptor beta
           subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 227

 Score = 28.7 bits (61), Expect = 0.63
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
 Frame = +3

Query: 303 KKSGKLLFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELSIGSMRFTTFDLGGHQQA 482
           KK   +  +G  ++GKT+L   L        VP++ P       G+      DL GH +A
Sbjct: 35  KKLPAVFLIGPSDSGKTSLFCELIYKEKKTTVPSIEPNEAVWKYGAW---LVDLPGHPRA 91

Query: 483 RRVWRDYFPA---VDAIVFLVDA 542
           +R     F     V A+VF++++
Sbjct: 92  KRWITTKFSGNYNVKAVVFVLNS 114


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
           Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 235 TFQIQKCLSSTGSLECWDFLVYGKSRASSCFW 330
           +  I++ L + GSL   D L+ G S A   FW
Sbjct: 655 SIDIKRVLENVGSLNHEDILLIGSSNAKYSFW 686


>SPCC70.07c |tmp1|tmp|thymidylate kinase Tmp1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 210

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = +3

Query: 312 GKLLFL-GLDNAGKTTLLHMLKDDRLAQH 395
           G+L+ + GLD +GK+T   +L D  ++QH
Sbjct: 7   GRLIVIEGLDRSGKSTQCQLLVDKLISQH 35


>SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit
           Caf16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 306 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQ 392
           K  + L +G + AGK+TLL +L    LA+
Sbjct: 29  KGSRTLLVGANGAGKSTLLKLLSGKSLAK 57


>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = +3

Query: 42  QRNILQISAKTRDTLPLGLVINIVQFNYLLM 134
           Q N++++  K  DT+PL + +NI++  +L +
Sbjct: 338 QGNVVELRLKYFDTVPLAVQLNILKTGFLFV 368


>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 20/51 (39%), Positives = 25/51 (49%)
 Frame = -2

Query: 436 PIDSSSDVGCKVGTC*ASLSSFNICKSVVFPALSSPRNKSLPDFFHRPRNP 284
           P    SD G    T  +SLS+FN C S+ F + +S    S     H PRNP
Sbjct: 436 PSTPLSDNGPTYSTPHSSLSNFNTCDSLSFSSNNSLYGYS--TLLH-PRNP 483


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -2

Query: 352 VFPALSSPRNKSLPDFFHRPRNPNTPVNQSRINIFESGT*RNN 224
           +F   SS R  S   F+H P+N    +N S +  F  G   NN
Sbjct: 510 IFEIESSLRLSSNKVFYHNPKNKKWLINTSDLITFSLGYICNN 552


>SPBC1289.12 |usp109||U1 snRNP-associated protein
           Usp109|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 352

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 361 KSVVFPALSSPRNKSLPDFFHRPRNPNTPVN 269
           +S  +PAL++P   S+ D  + P  P +P+N
Sbjct: 256 QSTYWPALAAPVYPSMKDVPNNPFTPFSPIN 286


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 343 ALSSPRNKSLPDFFHRPRNPNTPVNQS 263
           A  S  N  LP F   P + ++PVNQS
Sbjct: 73  AEESDPNLKLPSFLAPPNDKDSPVNQS 99


>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
           Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
 Frame = +3

Query: 372 KDDRLAQHVPTLH----PTSEELSIGSMRFTTF 458
           KD  +A+HV  LH     +SE L+IG + F  F
Sbjct: 520 KDRNIARHVINLHTNLQESSETLAIGEIPFDKF 552


>SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 388

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 9/33 (27%), Positives = 21/33 (63%)
 Frame = +3

Query: 468 GHQQARRVWRDYFPAVDAIVFLVDACDRPRLPE 566
           G  ++RRVW+++  A+DA  +   + ++ ++ E
Sbjct: 306 GEYESRRVWKNFAVALDAGDYAAASQEKSKIEE 338


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,285,263
Number of Sequences: 5004
Number of extensions: 45724
Number of successful extensions: 165
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)