Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12o17f
         (538 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    28   0.77 
SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory...    26   3.1  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    26   3.1  
SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter N...    25   7.2  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   7.2  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      25   9.5  

>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 28.3 bits (60), Expect = 0.77
 Identities = 14/58 (24%), Positives = 30/58 (51%)
 Frame = -1

Query: 292 IIHNYFKRPLTSPFTQNHSRRCIISNNLRQG*AMTSIVTSTTVFYMYFRDETFFFIPS 119
           ++H + +  L  PF   H R  I+ NN R+   +T +++   ++ ++F    F+ + S
Sbjct: 322 VVHFFIRDSLEVPFIWQHRRDYIVHNN-RERNTITPLLSQNDLWNIFFLCTKFWSLHS 378


>SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory
           subunit Dfp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 545

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
 Frame = +2

Query: 272 FEVVVNDKLIYS--KLKTMALP-DYGE-VAQVVHDVSKGQEPREIKGEQPIN 415
           FEVV N+ +I +  K +T+  P  Y + V ++ HD  + ++   +KG  PIN
Sbjct: 60  FEVVNNENIITTTPKHQTVITPKSYRKSVKRIKHDAPQNEDIPVMKGLAPIN 111


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2104

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -1

Query: 250 TQNHSRRCIISNNLRQ 203
           TQ H  RCII NNL+Q
Sbjct: 656 TQPHFVRCIIPNNLKQ 671


>SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter
           Nic1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 405

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = -1

Query: 388 PWFLAF*NIVNYLS-YFSIIWQCHCFELRVNQLI---IHNYFKRPLTSPFTQNHSR 233
           P    F N +N LS  + I+  C C    +  L    +HNYFK+  T P    + R
Sbjct: 312 PMESTFWNGLNRLSDNYEIVGGCICGAFVLAGLFGISMHNYFKKKFTPPVQVGNDR 367


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = -3

Query: 113 F*LIPISSYNPYFTILESLIHR*LNLKVSH*NTFMHN 3
           F LIPISS  P+ T  ESL    L   +SH  +F  N
Sbjct: 15  FLLIPISSALPFQTFEESLK---LKSNISHTGSFFAN 48


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -1

Query: 343 FSIIWQCHCFELRVNQLIIHNYFK 272
           F  ++QC  + L+ N++ + NYF+
Sbjct: 814 FLELYQCFFYVLQTNEMYLANYFQ 837


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,027,573
Number of Sequences: 5004
Number of extensions: 39088
Number of successful extensions: 87
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)