Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12o17f
         (538 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.6  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   4.6  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   6.0  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   8.0  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 9/28 (32%), Positives = 10/28 (35%)
 Frame = +2

Query: 176 CDYGGHCLALAQIIRNDTPSAMVLCKRG 259
           C Y  HC AL      D     + C  G
Sbjct: 737 CRYEAHCFALCHCCDFDACDCEMTCPAG 764


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 292 IIHNYFKRPLTSPFTQNHS 236
           IIHNY  R   SP + N S
Sbjct: 726 IIHNYIMRGEASPRSPNAS 744


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +3

Query: 213 LLEMIHLLLW 242
           LL+MIHL+ W
Sbjct: 13  LLQMIHLIAW 22


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 111 LTHSYFLLQPL 79
           +THSYF+  PL
Sbjct: 230 ITHSYFMPDPL 240


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,927
Number of Sequences: 438
Number of extensions: 2536
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15213684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)