Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12o13f
         (547 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    25   0.66 
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    23   2.0  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    23   2.0  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    23   2.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   4.7  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   4.7  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   8.2  

>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 24.6 bits (51), Expect = 0.66
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 290 ECMAPPSYEEVVGVHYPGCPPQPI 361
           EC A P    +  + YPGC P+PI
Sbjct: 28  ECQATPV---IHFLQYPGCVPKPI 48


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -2

Query: 537 CCKNHDLEDTVTDALESSVATVTTVS 460
           CC+ HD+   V  A ES      T S
Sbjct: 58  CCRTHDMCPDVMSAGESKHGLTNTAS 83


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -2

Query: 537 CCKNHDLEDTVTDALESSVATVTTVS 460
           CC+ HD+   V  A ES      T S
Sbjct: 63  CCRTHDMCPDVMSAGESKHGLTNTAS 88


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -2

Query: 537 CCKNHDLEDTVTDALESSVATVTTVS 460
           CC+ HD+   V  A ES      T S
Sbjct: 63  CCRTHDMCPDVMSAGESKHGLTNTAS 88


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 528  NHDLEDTVTDALESSVATVTTVS 460
            NH   D VT    + +AT TTVS
Sbjct: 1297 NHAYRDAVTVPGNNLIATNTTVS 1319


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 7/28 (25%), Positives = 16/28 (57%)
 Frame = +2

Query: 140 IVVSYRSIRQKTRNTQQRRVYVGTRARP 223
           + +S+R  R +T   Q + +++   A+P
Sbjct: 266 LTLSFRDFRDRTTEQQHKAMFLVVTAQP 293


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 7/28 (25%), Positives = 16/28 (57%)
 Frame = +2

Query: 140 IVVSYRSIRQKTRNTQQRRVYVGTRARP 223
           + +S+R  R +T   Q + +++   A+P
Sbjct: 261 LTLSFRDFRDRTTEQQHKAMFLVVTAQP 288


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 6/18 (33%), Positives = 14/18 (77%)
 Frame = -2

Query: 84  ILYQLIFFSTKQCEPSEE 31
           ++++L++F  +  +PSEE
Sbjct: 338 LIHRLVYFQNEYEQPSEE 355


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,573
Number of Sequences: 438
Number of extensions: 3197
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)