Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12o12f
         (622 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0346 - 14837982-14838122,14838208-14838327,14838411-148385...    29   2.3  
11_03_0210 - 11693750-11693797,11694017-11694094,11694285-116943...    28   6.9  
11_04_0226 + 15092313-15092873                                         27   9.1  
07_03_0037 + 12709014-12709104,12709407-12709612,12710033-127100...    27   9.1  

>06_02_0346 -
           14837982-14838122,14838208-14838327,14838411-14838564,
           14838793-14838866,14838962-14839095,14839207-14839326,
           14843174-14843308,14843842-14843976,14844343-14845003,
           14845103-14845264,14845348-14845510,14880834-14881021
          Length = 728

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
 Frame = +1

Query: 358 DISIPYLYDNLSDALYLPSVEDASRVLEEVAKGAVHVKLTQNGLSAAIEDKNNRFMFIA- 534
           +IS P ++D++   L     E   RVL+ + +     KL+ + ++  I         ++ 
Sbjct: 209 EISFPSMFDSVGPHLSGLQDEHKQRVLDALGEYDHQSKLSADAIAKQIRLVQTCHARVSD 268

Query: 535 -LKDAMEGESRLRPPPAP 585
            +   + GESR +PPP P
Sbjct: 269 HIISIIRGESRTQPPPDP 286


>11_03_0210 -
           11693750-11693797,11694017-11694094,11694285-11694371,
           11694751-11694884,11695021-11695093,11695352-11695408,
           11697295-11697378,11698748-11698843,11699133-11699498
          Length = 340

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
 Frame = +1

Query: 310 EETLSVEDFSRKNNEGDISIPYLYDNLSDALYLPS-----VEDASRVLE 441
           E+ +  ++F+    +   S+P+L++ + D  Y PS     VE+A RVLE
Sbjct: 256 EQIMQSKEFTASYVQVRGSMPFLWEQIVDLTYKPSFDVVRVEEAPRVLE 304


>11_04_0226 + 15092313-15092873
          Length = 186

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 200 LLDKSPHKNTGTVDALATLRTSNGNSKRQNAIF 102
           +LD+ P +NT T +A+ T  T+ G+     A+F
Sbjct: 25  VLDRMPDRNTVTCNAMLTGYTAAGDMANAEAVF 57


>07_03_0037 +
           12709014-12709104,12709407-12709612,12710033-12710097,
           12710143-12710404,12711332-12711448,12711779-12712056,
           12712304-12712406
          Length = 373

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
 Frame = +1

Query: 340 RKNNEGDISIPYLYDNLSDALYLPSVEDASRVLEEVAKGAVHV-KLTQ--NGLSAAIEDK 510
           ++NN G ++ PYLY N S A  LP+VE  +     V  G+  + KL    N  SA +  +
Sbjct: 120 KRNNGGILAGPYLY-NESFADALPAVESIAPANHTVRSGSSTLCKLVSWWNSSSAGLSSR 178

Query: 511 NNRFM 525
           ++  +
Sbjct: 179 DSAIL 183


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,430,827
Number of Sequences: 37544
Number of extensions: 330264
Number of successful extensions: 903
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)