Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12o10f
         (562 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    45   6e-07
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    28   0.056
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   8.5  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 44.8 bits (101), Expect = 6e-07
 Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 9/143 (6%)
 Frame = +3

Query: 132 RIVSGWEATPGQHPHHAALRMVDPTGGVFACGGSIVHREWVITAAHCVAGRITVVIRAGV 311
           RIV G      + P  A ++     G +  CG +I+ + +V+TAAHC+    T  +   V
Sbjct: 160 RIVGGTNTGINEFPMMAGIKRTYEPGMI--CGATIISKRYVLTAAHCIIDENTTKLAIVV 217

Query: 312 -------TNLTTPEYISESTEWYNYPTYDDTRPNLVQPNDISLLRLHRPVVFTRYLQP-- 464
                     T    +    +   +P YD    +  Q NDI+LL+  + + F   + P  
Sbjct: 218 GEHDWSSKTETNATVLHSINKVIIHPKYDIIEKDDWQINDIALLKTEKDIKFGDKVGPAC 277

Query: 465 IRVQSSADAFRNYDGLTVYASGH 533
           +  Q   D+F   D +TV   GH
Sbjct: 278 LPFQHFLDSFAGSD-VTVLGWGH 299


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 28.3 bits (60), Expect = 0.056
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = -3

Query: 137 NTEICGIYIFVDIFNEVGLDFLGKALPTKHK 45
           N E+CGIY   +   ++ ++F+   +P +H+
Sbjct: 88  NEEVCGIYFLAEPDQKIEINFITFDIPCEHR 118


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +3

Query: 309 VTNLTTPEYISESTEWYNYPTYDDTRP 389
           ++   TP +  E   +Y  P+YD   P
Sbjct: 394 ISGSATPVFHQEMALYYLKPSYDAQEP 420


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,159
Number of Sequences: 438
Number of extensions: 4080
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)