Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12o08r
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ...    30   0.27 
SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces po...    28   1.1  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    27   2.6  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    27   2.6  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    25   7.8  

>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 846

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = +1

Query: 460 IFMVLNQYYKIAIFIKFPPDAELRFVKFEFHSHWKTLINKKEKLHLIFMXKKFKKRP 630
           ++M+LN+Y ++A   K P        K + H H   L N+K  L   F+  K +K P
Sbjct: 304 MYMLLNEYQELADTKKVPHRDFYNVRKVDTHVHHSALANQKHLLR--FIKAKLRKCP 358


>SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -2

Query: 588 FFLLIYKGLPVTVKFKFYKSQLCIRWK-FDKNRDFIVLI 475
           FFLL+Y   P+ ++F  YK+ + ++ +    N  FIV+I
Sbjct: 88  FFLLVYIDAPIMLRFNRYKTYVILQCQHVVANFKFIVII 126


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 21/65 (32%), Positives = 30/65 (46%)
 Frame = +1

Query: 367  RTFT*KYCTGE*FMFKV*FNLNLYSLHVCEMIFMVLNQYYKIAIFIKFPPDAELRFVKFE 546
            RTFT  Y     F+  + +   +   +V   IF++L+  Y I I +K      L F  F 
Sbjct: 1272 RTFTGLYIVHLLFLLTIFYPCPIAYTYVRNSIFLILSICYTINICVKV---YGLSFYYF- 1327

Query: 547  FHSHW 561
            FHS W
Sbjct: 1328 FHSFW 1332


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = +1

Query: 451 CEMIFMVLNQYYKIAIFIKFPPDAELRFVKFEFHSHWKTLINKK---EKLHL 597
           CE  + + +Q + +  FI+  PD      + + H HWK    K    +KLHL
Sbjct: 693 CE--YCLAHQPFLLRSFIRSLPDCLFINTQVKHHEHWKLWARKNWLPKKLHL 742


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +1

Query: 523 ELRFVKFEFHSHWKTLINKKEKLHLI 600
           E++    EF+  W+ L+N++E+L L+
Sbjct: 716 EVKDEDLEFYKKWEKLLNQEERLLLL 741


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,711,871
Number of Sequences: 5004
Number of extensions: 54942
Number of successful extensions: 123
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)