Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12o08f
         (601 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16012| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0)              29   2.2  
SB_40870| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_20763| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_1606| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.8  
SB_37145| Best HMM Match : ig (HMM E-Value=8e-07)                      28   5.0  
SB_13109| Best HMM Match : Dynein_heavy (HMM E-Value=2.6e-09)          28   5.0  
SB_9895| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.0  
SB_45116| Best HMM Match : EGF (HMM E-Value=0)                         28   6.6  
SB_41989| Best HMM Match : RVT_1 (HMM E-Value=1.2e-33)                 28   6.6  

>SB_16012| Best HMM Match : Glyco_hydro_20 (HMM E-Value=0)
          Length = 1788

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 240 ARTTTAACSPTNCWRRSRNWPTLDSTRILLRRSS 341
           A+  T   +P +CW+  R  PT++  R+  RR+S
Sbjct: 46  AQLKTTTMAPHSCWKTIRPTPTINGFRMAGRRNS 79


>SB_40870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 431

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 200 HCCPPEELERRAESTHHYCGVFTDELLAP 286
           HC P + L +R  +T+HY   F++  + P
Sbjct: 35  HCLPAQALSQRKRNTNHYYWRFSNNTVTP 63


>SB_20763| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 98

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/60 (28%), Positives = 23/60 (38%)
 Frame = -1

Query: 595 RIAACSRFNHLPVLCALKVSAFTLEGGDGIVVVFLRHNDGDDAPALVDDGRAGDVPVRRL 416
           R+A CS  N     C  K S F +   + +        +GD     +  G  GD   RRL
Sbjct: 36  RLAMCSGSNRRMAACLPKRSVFPIREDENLADNLAIDGEGDAIARALFSGEVGDSKKRRL 95


>SB_1606| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 106

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/26 (57%), Positives = 17/26 (65%)
 Frame = -1

Query: 454 DDGRAGDVPVRRLEGRRAPPLRQVPV 377
           D+G  G+ P RRL  R AP LR VPV
Sbjct: 65  DEGHKGE-PARRLVFRSAPCLRAVPV 89


>SB_37145| Best HMM Match : ig (HMM E-Value=8e-07)
          Length = 323

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = -1

Query: 451 DGRAGDVPVRRLEGRRAPPLRQVPVA*HYQYALGSVYEDLLSSILVESN 305
           D   GD P RR    R      VPV  HYQ ++ +V E   S +++E N
Sbjct: 46  DVLGGDFPCRRFIDLRITARCNVPVTSHYQGSVMNVAEG--SEVMLECN 92


>SB_13109| Best HMM Match : Dynein_heavy (HMM E-Value=2.6e-09)
          Length = 1703

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/73 (24%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
 Frame = -1

Query: 475  DDAPALVDDGRAGDVPVRRLEGRRAPPLRQVP-VA*HYQYALGSVYEDLLSSILVESNVG 299
            D+  A +++ R G  P+          +  +P +   YQY+L + + +L  + + +SN  
Sbjct: 1318 DETEAKINESRRGYNPIAAHASVLFFSITDLPNIDPMYQYSL-TWFVNLFLNSIHDSNKS 1376

Query: 298  QFLERRQQFVGEH 260
            + LERR +++ +H
Sbjct: 1377 KILERRLRYLSDH 1389


>SB_9895| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1547

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
 Frame = +2

Query: 116 IVESMSIPAEIHERNGKKYASVGSIL-PIHCCPPEELERRAESTHHYCGVFTDELLAPLE 292
           +V+S +I   ++   GK Y SV ++  P+    PE+   R   T HY    T  + A +E
Sbjct: 15  LVKSWAIDISLYTGLGK-YLSVNNLTKPVGIFIPEDTPYRRSPTEHYFIKPTHNISA-IE 72

Query: 293 ELAYVRLD-----ENTAEKVFINRAKRI 361
            + Y R +        + K+F +R KR+
Sbjct: 73  NIRYHRFNIPNSHSTVSIKLFPSRGKRL 100


>SB_45116| Best HMM Match : EGF (HMM E-Value=0)
          Length = 2023

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +3

Query: 228 DALRARTTTAACSPTNCWRRSRNWPT 305
           D LR  T  A C+  NC RRSR   T
Sbjct: 405 DRLRQATRGAVCNTENCVRRSRKLAT 430


>SB_41989| Best HMM Match : RVT_1 (HMM E-Value=1.2e-33)
          Length = 585

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +2

Query: 50  SDLFSKKTAMSKRTVLNENYKGIVESMSIPAEIHERNGKKYASVGSILPIHCCPPEELE 226
           +D+ S    +  R  L +N+ G     +I  +  ++  +K     S LPI CC P + E
Sbjct: 30  ADVASDHHLIVARLKLKKNWTGGSSHNTITLKDSKKKEEKIPPADSDLPIECCAPTKEE 88


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,754,597
Number of Sequences: 59808
Number of extensions: 350206
Number of successful extensions: 987
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)