Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12o08f
(601 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003151-4|AAK18918.2| 142|Caenorhabditis elegans Hypothetical ... 29 2.5
AF003151-3|ABJ99067.1| 247|Caenorhabditis elegans Hypothetical ... 29 2.5
AL023828-22|CAA19467.2| 272|Caenorhabditis elegans Hypothetical... 29 3.3
AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for... 29 3.3
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for... 29 3.3
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei... 29 3.3
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei... 29 3.3
AF016654-1|AAB66028.1| 731|Caenorhabditis elegans Hypothetical ... 29 3.3
Z74031-17|CAN86923.1| 380|Caenorhabditis elegans Hypothetical p... 28 4.4
Z74031-16|CAA98452.1| 378|Caenorhabditis elegans Hypothetical p... 28 4.4
U80027-19|AAC48129.2| 313|Caenorhabditis elegans F-box a protei... 28 5.9
>AF003151-4|AAK18918.2| 142|Caenorhabditis elegans Hypothetical
protein D1007.13a protein.
Length = 142
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -2
Query: 597 YA*PPAAGSTTFQFCVLSKYPPS 529
Y+ PPA STT+ + S YPPS
Sbjct: 26 YSPPPATSSTTYGSSIPSTYPPS 48
>AF003151-3|ABJ99067.1| 247|Caenorhabditis elegans Hypothetical
protein D1007.13b protein.
Length = 247
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -2
Query: 597 YA*PPAAGSTTFQFCVLSKYPPS 529
Y+ PPA STT+ + S YPPS
Sbjct: 131 YSPPPATSSTTYGSSIPSTYPPS 153
>AL023828-22|CAA19467.2| 272|Caenorhabditis elegans Hypothetical
protein Y17G7B.19 protein.
Length = 272
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = +2
Query: 146 IHERNGKKYASVGSILPIHCCPPEELERRAESTHHYCGVFTDELLAPLEELAYV 307
+ + +GK S G HCCP ++ ++T ++ TD P E L +V
Sbjct: 182 LSKSSGKCPKSNGMCHRGHCCPRLTIDEARKATPYHLNYVTDTQCDPTEPLDFV 235
>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
protein.
Length = 4280
Score = 28.7 bits (61), Expect = 3.3
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 198 YTAARPKSWSDALRARTTTAACSP 269
YTA P WSD+L RTT + P
Sbjct: 3221 YTAEGPGPWSDSLEIRTTGSELGP 3244
>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
protein.
Length = 4450
Score = 28.7 bits (61), Expect = 3.3
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 198 YTAARPKSWSDALRARTTTAACSP 269
YTA P WSD+L RTT + P
Sbjct: 3221 YTAEGPGPWSDSLEIRTTGSELGP 3244
>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
805, isoform b protein.
Length = 4450
Score = 28.7 bits (61), Expect = 3.3
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 198 YTAARPKSWSDALRARTTTAACSP 269
YTA P WSD+L RTT + P
Sbjct: 3221 YTAEGPGPWSDSLEIRTTGSELGP 3244
>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
805, isoform a protein.
Length = 4280
Score = 28.7 bits (61), Expect = 3.3
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 198 YTAARPKSWSDALRARTTTAACSP 269
YTA P WSD+L RTT + P
Sbjct: 3221 YTAEGPGPWSDSLEIRTTGSELGP 3244
>AF016654-1|AAB66028.1| 731|Caenorhabditis elegans Hypothetical
protein C17A2.5 protein.
Length = 731
Score = 28.7 bits (61), Expect = 3.3
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +3
Query: 180 WGPYCRYTAARPKSW 224
W PYC Y A+RP W
Sbjct: 475 WVPYCDYEASRPLGW 489
>Z74031-17|CAN86923.1| 380|Caenorhabditis elegans Hypothetical
protein F32D8.7b protein.
Length = 380
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/45 (26%), Positives = 17/45 (37%)
Frame = +3
Query: 138 LLKYTRETARSTRAWGPYCRYTAARPKSWSDALRARTTTAACSPT 272
+ Y RET + W P CR + D + + C PT
Sbjct: 180 MFTYNRETLQCDEFWFPGCRTAETNANLFEDYQQCQKIADLCKPT 224
>Z74031-16|CAA98452.1| 378|Caenorhabditis elegans Hypothetical
protein F32D8.7a protein.
Length = 378
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/45 (26%), Positives = 17/45 (37%)
Frame = +3
Query: 138 LLKYTRETARSTRAWGPYCRYTAARPKSWSDALRARTTTAACSPT 272
+ Y RET + W P CR + D + + C PT
Sbjct: 178 MFTYNRETLQCDEFWFPGCRTAETNANLFEDYQQCQKIADLCKPT 222
>U80027-19|AAC48129.2| 313|Caenorhabditis elegans F-box a protein
protein 64 protein.
Length = 313
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 311 LDENTAEKVFINRAKRILIVSSDGHLAQWRCAPTFESAN 427
LD+ + E + ++ +I ++ HL QW+ A FE N
Sbjct: 172 LDDQSLEAIKLSNPSQINQLAQITHLNQWKTAKNFELCN 210
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,822,237
Number of Sequences: 27780
Number of extensions: 247338
Number of successful extensions: 941
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -