Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12o02f
         (518 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator ...    27   2.2  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    27   2.2  
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe...    26   2.9  
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    26   3.9  
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz...    25   6.8  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    25   6.8  
SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces pomb...    25   6.8  
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr...    25   6.8  

>SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 325

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +3

Query: 369 EEHFFLPYKFGDAKM 413
           ++HFF+PY FG A++
Sbjct: 212 DDHFFIPYIFGSAQL 226


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 280 DADSPDASTGRRRESHVENPPVNCSSTAHNK 188
           +A +P +   RRR +H+ NPP    + A N+
Sbjct: 139 NAHAPHSQNRRRRSNHLNNPPEAPITEASNE 169


>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 513 IRELLIKKMGRTNFLCKQKK 454
           +R+ +IKK    NFLC  KK
Sbjct: 171 VRDKIIKKCAEVNFLCIHKK 190


>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -3

Query: 291 VDPRTRTALTRLPAGAVNLTLRTRQLIVAARLTTKLRKSL-SLEVILPILKA 139
           VDP+T  ALT  P   V  +  + Q    +   +K +K L ++E   P+L+A
Sbjct: 529 VDPKTGKALTNNPVPPVETSSSSGQNFFGSFFGSKNKKRLAAMEPPPPVLRA 580


>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
           Utp5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 666

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -3

Query: 144 KALALSVDLGSATSLVDTATIAVNTNNRANFILQEICTGTQN 19
           +A ALS  + ++TSL    T A+ TN+++   L E C    N
Sbjct: 447 QAQALSTQISASTSLSTVLTQALKTNDQS---LLESCFNNNN 485


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1465

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = -3

Query: 306  TLVNCVDPRTRTALTRLPAGAVNLTLRTRQLIVAARLTTKLRKSLSLE 163
            +L NC+        +R+  G  N +   RQLI  AR+     + L L+
Sbjct: 1340 SLKNCISQLEDGLYSRVAEGGANFSSGQRQLICLARVLLTSTRILLLD 1387


>SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 386

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 8/21 (38%), Positives = 17/21 (80%)
 Frame = -3

Query: 96  DTATIAVNTNNRANFILQEIC 34
           D++++  +TNNR + +L+E+C
Sbjct: 92  DSSSLPSSTNNRYSSVLKELC 112


>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 599

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 424 TFTCKYTKFLFFLFAQ 471
           TF C+YT+FL F  +Q
Sbjct: 354 TFRCRYTQFLIFWASQ 369


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,899,767
Number of Sequences: 5004
Number of extensions: 33282
Number of successful extensions: 84
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)