Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12n22r
         (703 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      25   0.53 
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          25   0.92 
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   6.5  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    21   8.6  

>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 115 LSTYFVKENYLYKTYREYN 59
           + TY V  NY  K  REYN
Sbjct: 197 IETYIVNTNYSSKNMREYN 215


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 24.6 bits (51), Expect = 0.92
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 115 LSTYFVKENYLYKTYREYN 59
           + TY V  NY  K  REYN
Sbjct: 197 IETYIVNTNYSSKYMREYN 215


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -1

Query: 550 TKLTKLKKNRVLFVCNVFDTKNFSR 476
           TK+ K+K++  + V N+  ++N S+
Sbjct: 173 TKINKIKEHDTVLVVNIEKSENESK 197


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/21 (38%), Positives = 9/21 (42%)
 Frame = -1

Query: 100 VKENYLYKTYREYNILKHVLY 38
           +  NY Y  Y  YN     LY
Sbjct: 85  LSNNYKYSNYNNYNNYNKKLY 105


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,774
Number of Sequences: 438
Number of extensions: 2868
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)