Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12n22f
         (621 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    25   0.45 
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    25   0.60 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   5.5  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 25.4 bits (53), Expect = 0.45
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 463 KENDGFRKIKQILEE*FLSYFVNTK 537
           K +D FR I +  +E F  YF+N++
Sbjct: 107 KNDDNFRNISEKYQEIFNGYFLNSE 131


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 162 DFVKCTLVCVSTYTFCVIVFIKLICILLYV 251
           D VK  L+       C+IV I L+ I++Y+
Sbjct: 388 DDVKLVLLNFGWQMICLIVVIALVSIIMYI 417


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -3

Query: 541 LVSCLQSNLRIILLKFVLFSEIHHFLSWNLLFQ 443
           LV  +   L+I L +FV+     H   WN +++
Sbjct: 600 LVKNIIPKLQIALSEFVINPHQQHLDQWNWVYE 632


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,753
Number of Sequences: 438
Number of extensions: 3311
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)