Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12m24f
         (622 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   3.2  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   4.2  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.5  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   9.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.7  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +2

Query: 14  IFHYDGFQTWRPPSV 58
           I HY G   W PP++
Sbjct: 126 ILHYTGKVLWTPPAI 140


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +2

Query: 14  IFHYDGFQTWRPPSV 58
           I H+ G   W+PP++
Sbjct: 126 ILHHTGKVVWKPPAI 140


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +2

Query: 20  HYDGFQTWRPPSV 58
           +Y G   W+PP+V
Sbjct: 136 YYSGLVVWQPPAV 148


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
 Frame = +1

Query: 295 PWTTLVSVGVMK--FTNKSARHATLCSILPSEIW 390
           PW   +   + +  + +  ARHA  C +   ++W
Sbjct: 355 PWIDAIMTQLREEGWIHHLARHAVACFLTRGDLW 388


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 222  QSVQASGSEAHPPHNPWNH 278
            +++  SGS   PP  P NH
Sbjct: 1849 RNIPVSGSPEPPPPPPRNH 1867


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = -1

Query: 238 DACTDCSSAKSRAPTPPPTTPKVDS 164
           D C  C   K      PP +P+ DS
Sbjct: 425 DKCYFCLDGKLPHDDQPPLSPQSDS 449


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,031
Number of Sequences: 438
Number of extensions: 3784
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)