Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12m16f
         (579 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1121 + 8893177-8893199,8893260-8893287,8893656-8893730,889...    30   1.2  
11_03_0209 - 11685211-11685341,11685557-11685623,11686608-116866...    28   6.2  

>01_01_1121 +
           8893177-8893199,8893260-8893287,8893656-8893730,
           8894748-8894813,8894917-8894959,8895102-8895150,
           8895899-8895992,8896078-8896130,8896921-8897005,
           8897242-8897344,8897421-8897513,8897985-8898051,
           8898309-8898375,8898463-8898516,8898632-8898766
          Length = 344

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 348 PFIFESTFAYVLLVKISTTFVTLGKKLKFNVACSTLP 458
           P  F  TF Y  LV   TTF  +G+  + N+ C   P
Sbjct: 37  PIDFIQTFQYGDLVHCETTFEKMGRTSQVNIICGQCP 73


>11_03_0209 -
           11685211-11685341,11685557-11685623,11686608-11686697,
           11686872-11686965,11687596-11687668,11687772-11687880,
           11690338-11690437,11691345-11691443,11691519-11691589,
           11691904-11691955,11691976-11692007
          Length = 305

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 564 TRNLKTNKLQYTNNPRINRSRH 499
           TR +K N  ++TN PR + SRH
Sbjct: 284 TRYVKANGRKFTNRPRFHLSRH 305


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,715,921
Number of Sequences: 37544
Number of extensions: 215976
Number of successful extensions: 363
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)