Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12m16f
         (579 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026215-5|AAB71321.2|  509|Caenorhabditis elegans Hypothetical ...    29   3.2  
AC025716-16|AAK39609.2|  917|Caenorhabditis elegans Hypothetical...    29   3.2  

>AF026215-5|AAB71321.2|  509|Caenorhabditis elegans Hypothetical
           protein F09G2.3 protein.
          Length = 509

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 15/60 (25%), Positives = 30/60 (50%)
 Frame = +3

Query: 372 AYVLLVKISTTFVTLGKKLKFNVACSTLPRGLFIVITNLRYFYVSIYLYADC*CIVVYLF 551
           A  L + +STT   +G  L F++AC       ++ + N+   +    ++A    +++YLF
Sbjct: 125 ATCLQLPVSTTHAVVGATLGFSIACKGFQGIQWMKVVNIVASWFISPIFAGTVSLILYLF 184


>AC025716-16|AAK39609.2|  917|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.5 protein.
          Length = 917

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +2

Query: 437 CCVQYSTSWFVHSHYQSEIFLCLDLFIRGLLVYCSLFVLRFRV 565
           C V +S    ++   +S++ LCL     G L+ C +F  R ++
Sbjct: 93  CIVAFSLMLLLYQFIESDVVLCLYSASWGFLIACYIFSTRVQI 135


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,247,905
Number of Sequences: 27780
Number of extensions: 240027
Number of successful extensions: 488
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)