Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12m07r
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    25   0.91 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.8  
AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    23   3.7  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 461 LVHSRDSDGYTPLHRAAYSNHLDAIS 384
           +V  +  DG+ P+H    SN+L  IS
Sbjct: 918 VVQYKTQDGFGPIHYGVCSNYLREIS 943


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -2

Query: 642 NTDFEKKSRNVWYVCFW 592
           N   E   RN W+V FW
Sbjct: 414 NLTVENNRRNPWFVEFW 430


>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP
          synthase 16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 98 HGIYAPLFEMVSPASSYVSS 39
          H IYAP F ++  AS+ + S
Sbjct: 6  HPIYAPFFGVMGAASAIIFS 25


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,410
Number of Sequences: 438
Number of extensions: 3785
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)