Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12m03f
(577 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81057-6|CAB02913.1| 221|Caenorhabditis elegans Hypothetical pr... 186 8e-48
D85499-1|BAA12821.1| 221|Caenorhabditis elegans manganese super... 186 8e-48
D12984-1|BAA02363.1| 221|Caenorhabditis elegans manganese super... 186 8e-48
X85790-1|CAA59790.1| 218|Caenorhabditis elegans mangenese super... 182 1e-46
X77021-1|CAA54319.1| 218|Caenorhabditis elegans manganese super... 182 1e-46
U42844-5|AAB53822.1| 218|Caenorhabditis elegans Sod (superoxide... 182 1e-46
AC006603-7|ABB51201.1| 576|Caenorhabditis elegans Hypothetical ... 28 4.1
Z74045-4|CAA98554.2| 924|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z74032-11|CAA98469.2| 924|Caenorhabditis elegans Hypothetical p... 27 7.2
AC006757-4|AAF60545.1| 610|Caenorhabditis elegans Hypothetical ... 27 7.2
Z50863-1|CAA90736.3| 353|Caenorhabditis elegans Hypothetical pr... 27 9.5
>Z81057-6|CAB02913.1| 221|Caenorhabditis elegans Hypothetical
protein F10D11.1 protein.
Length = 221
Score = 186 bits (454), Expect = 8e-48
Identities = 87/142 (61%), Positives = 108/142 (76%)
Frame = +2
Query: 152 IMLMSQRIGSLIRVAGASRQKHTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLNV 331
+ +S+ + + VA A R KH+LP+LPY+Y LEPVIS EIM LHH KHHATY+NNLN
Sbjct: 6 VRCVSKLVQPITGVA-AVRSKHSLPDLPYDYADLEPVISHEIMQLHHQKHHATYVNNLNQ 64
Query: 332 AEEKLAQAQAKGDIDTIINLAPALKFNGGGHINHSIFWHNLSPNGGKPSDVLTKAVEKDF 511
EEKL +A +KG++ I L PALKFNGGGHINHSIFW NL+ +GG+PS L A++ DF
Sbjct: 65 IEEKLHEAVSKGNVKEAIALQPALKFNGGGHINHSIFWTNLAKDGGEPSAELLTAIKSDF 124
Query: 512 GSWDNLKNQLSTASVAVQGSGW 577
GS DNL+ QLS ++VAVQGSGW
Sbjct: 125 GSLDNLQKQLSASTVAVQGSGW 146
>D85499-1|BAA12821.1| 221|Caenorhabditis elegans manganese
superoxide dismutase protein.
Length = 221
Score = 186 bits (454), Expect = 8e-48
Identities = 87/142 (61%), Positives = 108/142 (76%)
Frame = +2
Query: 152 IMLMSQRIGSLIRVAGASRQKHTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLNV 331
+ +S+ + + VA A R KH+LP+LPY+Y LEPVIS EIM LHH KHHATY+NNLN
Sbjct: 6 VRCVSKLVQPITGVA-AVRSKHSLPDLPYDYADLEPVISHEIMQLHHQKHHATYVNNLNQ 64
Query: 332 AEEKLAQAQAKGDIDTIINLAPALKFNGGGHINHSIFWHNLSPNGGKPSDVLTKAVEKDF 511
EEKL +A +KG++ I L PALKFNGGGHINHSIFW NL+ +GG+PS L A++ DF
Sbjct: 65 IEEKLHEAVSKGNVKEAIALQPALKFNGGGHINHSIFWTNLAKDGGEPSAELLTAIKSDF 124
Query: 512 GSWDNLKNQLSTASVAVQGSGW 577
GS DNL+ QLS ++VAVQGSGW
Sbjct: 125 GSLDNLQKQLSASTVAVQGSGW 146
>D12984-1|BAA02363.1| 221|Caenorhabditis elegans manganese
superoxide dismutaseprecursor protein.
Length = 221
Score = 186 bits (454), Expect = 8e-48
Identities = 87/142 (61%), Positives = 108/142 (76%)
Frame = +2
Query: 152 IMLMSQRIGSLIRVAGASRQKHTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLNV 331
+ +S+ + + VA A R KH+LP+LPY+Y LEPVIS EIM LHH KHHATY+NNLN
Sbjct: 6 VRCVSKLVQPITGVA-AVRSKHSLPDLPYDYADLEPVISHEIMQLHHQKHHATYVNNLNQ 64
Query: 332 AEEKLAQAQAKGDIDTIINLAPALKFNGGGHINHSIFWHNLSPNGGKPSDVLTKAVEKDF 511
EEKL +A +KG++ I L PALKFNGGGHINHSIFW NL+ +GG+PS L A++ DF
Sbjct: 65 IEEKLHEAVSKGNVKEAIALQPALKFNGGGHINHSIFWTNLAKDGGEPSAELLTAIKSDF 124
Query: 512 GSWDNLKNQLSTASVAVQGSGW 577
GS DNL+ QLS ++VAVQGSGW
Sbjct: 125 GSLDNLQKQLSASTVAVQGSGW 146
>X85790-1|CAA59790.1| 218|Caenorhabditis elegans mangenese
superoxide dismutase protein.
Length = 218
Score = 182 bits (444), Expect = 1e-46
Identities = 84/131 (64%), Positives = 102/131 (77%), Gaps = 2/131 (1%)
Frame = +2
Query: 191 VAG--ASRQKHTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLNVAEEKLAQAQAK 364
VAG A R KHTLP+LP++Y LEPVIS EIM LHH KHHATY+NNLN EEKL +A +K
Sbjct: 16 VAGVLAVRSKHTLPDLPFDYADLEPVISHEIMQLHHQKHHATYVNNLNQIEEKLHEAVSK 75
Query: 365 GDIDTIINLAPALKFNGGGHINHSIFWHNLSPNGGKPSDVLTKAVEKDFGSWDNLKNQLS 544
G++ I L PALKFNGGGHINHSIFW NL+ +GG+PS L +++DFGS DNL+ +LS
Sbjct: 76 GNLKEAIALQPALKFNGGGHINHSIFWTNLAKDGGEPSKELMDTIKRDFGSLDNLQKRLS 135
Query: 545 TASVAVQGSGW 577
++AVQGSGW
Sbjct: 136 DITIAVQGSGW 146
>X77021-1|CAA54319.1| 218|Caenorhabditis elegans manganese
superoxide dismutase protein.
Length = 218
Score = 182 bits (444), Expect = 1e-46
Identities = 84/131 (64%), Positives = 102/131 (77%), Gaps = 2/131 (1%)
Frame = +2
Query: 191 VAG--ASRQKHTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLNVAEEKLAQAQAK 364
VAG A R KHTLP+LP++Y LEPVIS EIM LHH KHHATY+NNLN EEKL +A +K
Sbjct: 16 VAGVLAVRSKHTLPDLPFDYADLEPVISHEIMQLHHQKHHATYVNNLNQIEEKLHEAVSK 75
Query: 365 GDIDTIINLAPALKFNGGGHINHSIFWHNLSPNGGKPSDVLTKAVEKDFGSWDNLKNQLS 544
G++ I L PALKFNGGGHINHSIFW NL+ +GG+PS L +++DFGS DNL+ +LS
Sbjct: 76 GNLKEAIALQPALKFNGGGHINHSIFWTNLAKDGGEPSKELMDTIKRDFGSLDNLQKRLS 135
Query: 545 TASVAVQGSGW 577
++AVQGSGW
Sbjct: 136 DITIAVQGSGW 146
>U42844-5|AAB53822.1| 218|Caenorhabditis elegans Sod (superoxide
dismutase) protein3 protein.
Length = 218
Score = 182 bits (444), Expect = 1e-46
Identities = 84/131 (64%), Positives = 102/131 (77%), Gaps = 2/131 (1%)
Frame = +2
Query: 191 VAG--ASRQKHTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLNVAEEKLAQAQAK 364
VAG A R KHTLP+LP++Y LEPVIS EIM LHH KHHATY+NNLN EEKL +A +K
Sbjct: 16 VAGVLAVRSKHTLPDLPFDYADLEPVISHEIMQLHHQKHHATYVNNLNQIEEKLHEAVSK 75
Query: 365 GDIDTIINLAPALKFNGGGHINHSIFWHNLSPNGGKPSDVLTKAVEKDFGSWDNLKNQLS 544
G++ I L PALKFNGGGHINHSIFW NL+ +GG+PS L +++DFGS DNL+ +LS
Sbjct: 76 GNLKEAIALQPALKFNGGGHINHSIFWTNLAKDGGEPSKELMDTIKRDFGSLDNLQKRLS 135
Query: 545 TASVAVQGSGW 577
++AVQGSGW
Sbjct: 136 DITIAVQGSGW 146
>AC006603-7|ABB51201.1| 576|Caenorhabditis elegans Hypothetical
protein B0524.7 protein.
Length = 576
Score = 28.3 bits (60), Expect = 4.1
Identities = 23/76 (30%), Positives = 30/76 (39%), Gaps = 6/76 (7%)
Frame = +2
Query: 314 INNLNVAEEKLAQAQAKGDIDTIINLAPALKFNGGGHINHSIF---WH---NLSPNGGKP 475
+ N K A+ K + N + LK NG INH + W + NG P
Sbjct: 358 LRNAKQKAAKRARKLVKNWKKSAQNKSGVLKINGNHVINHDVVVKKWKVELKIEGNGESP 417
Query: 476 SDVLTKAVEKDFGSWD 523
V+ KA E G WD
Sbjct: 418 RKVVRKAKETS-GYWD 432
>Z74045-4|CAA98554.2| 924|Caenorhabditis elegans Hypothetical
protein T27F2.2 protein.
Length = 924
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = -1
Query: 292 VMKTHDFTANDRLQCIVLVRKLWQSMLLARSTG 194
++ HD++ N R+ C++ V + W +LL R +G
Sbjct: 556 LVDVHDYSTNQRISCVLGVAQDW-IVLLERPSG 587
>Z74032-11|CAA98469.2| 924|Caenorhabditis elegans Hypothetical
protein T27F2.2 protein.
Length = 924
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = -1
Query: 292 VMKTHDFTANDRLQCIVLVRKLWQSMLLARSTG 194
++ HD++ N R+ C++ V + W +LL R +G
Sbjct: 556 LVDVHDYSTNQRISCVLGVAQDW-IVLLERPSG 587
>AC006757-4|AAF60545.1| 610|Caenorhabditis elegans Hypothetical
protein Y40C7B.5 protein.
Length = 610
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +3
Query: 456 HQMVASLLMFSPKPLRKTLDPGIT*RINCRQLL 554
H++V +L F P PL+++++P T IN L+
Sbjct: 68 HKIVETLNNFKPSPLQRSIEPPKTPSINKPSLI 100
>Z50863-1|CAA90736.3| 353|Caenorhabditis elegans Hypothetical
protein C14H10.1 protein.
Length = 353
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +1
Query: 1 GYLCIVLWVYVIYECNLQFSRCIISSFLIP 90
G + W+Y + C+L S I+ +FL+P
Sbjct: 102 GEVTSATWIYALIGCSLVVSTGILPAFLLP 131
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,124,668
Number of Sequences: 27780
Number of extensions: 267459
Number of successful extensions: 704
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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