Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12m01f
         (429 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0204 + 1539859-1540158                                           30   0.69 
05_04_0307 + 20066169-20066410,20066803-20066858,20067490-200675...    29   1.2  
11_06_0395 + 23088737-23088823,23090198-23090346,23090570-230907...    27   4.9  
05_06_0110 + 25632514-25632834,25633200-25634039                       27   6.4  
01_05_0174 + 18919759-18920265,18920381-18920443,18921060-189217...    27   6.4  

>12_01_0204 + 1539859-1540158
          Length = 99

 Score = 30.3 bits (65), Expect = 0.69
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 158 YAGSWSPPGASDIINFSGRVTDVKADD 238
           +AGSW+  G   + +F GRVT V+  D
Sbjct: 38  HAGSWNGEGQGGLAHFGGRVTRVRRGD 64


>05_04_0307 +
           20066169-20066410,20066803-20066858,20067490-20067581,
           20068400-20068502,20068623-20068760,20068898-20069148
          Length = 293

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +2

Query: 41  IRDVDFEPNSQRILDIVISNLFNEIGELLRAAD 139
           +RDV+  PN + + D+   N  +E+ ELL+ AD
Sbjct: 218 VRDVELSPNPEEVADVKYVNR-DELKELLKKAD 249


>11_06_0395 + 23088737-23088823,23090198-23090346,23090570-23090708,
            23090795-23090889,23090967-23091080,23091674-23091803,
            23091931-23092052,23092889-23093007,23093946-23094034,
            23094072-23094245,23094310-23094616,23094726-23095180,
            23095334-23096315,23096381-23097396,23097757-23097792,
            23098065-23098130
          Length = 1359

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +2

Query: 38   HIRDVDFEPNSQRILDIVISNLFNEI 115
            H+ ++DFE    +++ ++ISN  N I
Sbjct: 1074 HVNNMDFESKETKLISVIISNCSNLI 1099


>05_06_0110 + 25632514-25632834,25633200-25634039
          Length = 386

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 20/68 (29%), Positives = 30/68 (44%)
 Frame = -1

Query: 333 AEPTDAETLGTARTKLSRVPT*LTRRKCRELKSSALTSVTRPEKLMMSDAPGGLQEPA*P 154
           A PT+A   G AR+K SRV       +   L      S   P   ++S +  G   PA P
Sbjct: 164 ALPTEAPVPGKARSKRSRVAPCSWSSRLMVLPPPP-ASPPSPASAVISPSESGTAAPAFP 222

Query: 153 SRRRGSAA 130
           +++   +A
Sbjct: 223 AKKAAKSA 230


>01_05_0174 +
           18919759-18920265,18920381-18920443,18921060-18921761,
           18922934-18923068,18923391-18923474,18924095-18924151,
           18924290-18924376,18924963-18925205
          Length = 625

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +2

Query: 38  HIRDVDFEPNSQRILDIVISNLFNEIGEL 124
           ++ D D+E N Q  +D+++    + IG+L
Sbjct: 281 NLTDKDYEDNKQHEIDLLVKKTIDRIGQL 309


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,574,997
Number of Sequences: 37544
Number of extensions: 200669
Number of successful extensions: 558
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)