Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12m01f
         (429 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC071853-1|AAH71853.1|  356|Homo sapiens GREB1 protein protein.        33   0.54 
AK092754-1|BAC03965.1|  615|Homo sapiens protein ( Homo sapiens ...    31   2.2  
BC032587-1|AAH32587.1|  442|Homo sapiens tubby like protein 3 pr...    29   8.8  
AF045583-1|AAC95431.1|  442|Homo sapiens tubby like protein 3 pr...    29   8.8  

>BC071853-1|AAH71853.1|  356|Homo sapiens GREB1 protein protein.
          Length = 356

 Score = 32.7 bits (71), Expect = 0.54
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = -1

Query: 255 KCRELKSSALTSVTRPEKLMMSDAPGGLQEPA--*PSRRRGSAALNNSPISLNKFEITMS 82
           KC++L  + L ++ RP  L  S  PG   +PA      R G  A    P+SL + ++   
Sbjct: 275 KCQQLAKNNLLALPRPSALGSSACPGRPGDPALLWAKARGGMGAAGLGPLSLLESDVASM 334

Query: 81  RMR 73
           R+R
Sbjct: 335 RVR 337


>AK092754-1|BAC03965.1|  615|Homo sapiens protein ( Homo sapiens
           cDNA FLJ35435 fis, clone SMINT2002620. ).
          Length = 615

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = -1

Query: 423 AVASATTFSRASPPEAKDLRTRLKMRISP---SAEPTDAETLGTARTKLSRVP 274
           A    ++F R S     DLRT    R+     S+  TD++ LG+ RTK  R P
Sbjct: 259 AFLKKSSFKRKSTSNLADLRTAHDARVPQRTLSSSSTDSQKLGSGRTKRWRSP 311


>BC032587-1|AAH32587.1|  442|Homo sapiens tubby like protein 3
           protein.
          Length = 442

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +2

Query: 170 WSPPGASDIINFSGRVTDVKADDFSSLHLRRVSYV 274
           W+    S ++NF GRVT     +F  +H     Y+
Sbjct: 368 WNSDTQSYVLNFRGRVTQASVKNFQIVHKNDPDYI 402


>AF045583-1|AAC95431.1|  442|Homo sapiens tubby like protein 3
           protein.
          Length = 442

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +2

Query: 170 WSPPGASDIINFSGRVTDVKADDFSSLHLRRVSYV 274
           W+    S ++NF GRVT     +F  +H     Y+
Sbjct: 368 WNSDTQSYVLNFRGRVTQASVKNFQLVHKNDPDYI 402


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,501,774
Number of Sequences: 237096
Number of extensions: 1003752
Number of successful extensions: 2369
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2369
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3373625546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)