Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12m01f
         (429 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    23   1.4  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    22   2.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   5.8  

>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -1

Query: 426 EAVASATTFSRASPPEAKDLRTRLKMRISPSAEPTDAETL 307
           E V +  T   A+P +A+++  +L+   S +   T AET+
Sbjct: 164 EPVWAIGTGKTATPQQAQEVHEKLRNWFSKNVNQTVAETV 203


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -1

Query: 420 VASATTFSRASPPEAKDLRTRLKMRISP 337
           +  +T+F R  PP A   R  L  R  P
Sbjct: 378 IGPSTSFPRFIPPNAYRFRPPLNPRFGP 405


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 4   ALSPSLACRLVPHPR 48
           A  P+LAC L P+P+
Sbjct: 212 ACPPTLACPLNPNPQ 226


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,902
Number of Sequences: 438
Number of extensions: 1838
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11121030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)