Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12l24f
(645 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U57846-1|AAB02265.1| 51|Homo sapiens ribosomal protein L39 pro... 66 1e-10
D79205-1|BAA11465.1| 51|Homo sapiens ribosomal protein L39 pro... 66 1e-10
BC070205-1|AAH70205.1| 51|Homo sapiens ribosomal protein L39 p... 66 1e-10
BC001019-1|AAH01019.1| 51|Homo sapiens ribosomal protein L39 p... 66 1e-10
AB061835-1|BAB79473.1| 51|Homo sapiens ribosomal protein L39 p... 66 1e-10
AB209077-1|BAD92314.1| 70|Homo sapiens ribosomal protein L39 v... 64 4e-10
L05096-1|AAC15859.1| 51|Homo sapiens ribosomal protein L39 pro... 60 5e-09
BC012328-1|AAH12328.1| 51|Homo sapiens ribosomal protein L39-l... 60 5e-09
AF548529-1|AAN52397.1| 51|Homo sapiens ribosomal protein L39-2... 60 5e-09
AB063610-1|BAC19837.1| 51|Homo sapiens ribosomal protein L39-l... 60 5e-09
AB063607-1|BAC19834.1| 29|Homo sapiens ribosomal protein L39-l... 54 4e-07
>U57846-1|AAB02265.1| 51|Homo sapiens ribosomal protein L39
protein.
Length = 51
Score = 65.7 bits (153), Expect = 1e-10
Identities = 29/36 (80%), Positives = 32/36 (88%)
Frame = +1
Query: 31 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIR 138
MS+HKTF IKR LAKK KQNRPIPQW+RM+TGN IR
Sbjct: 1 MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIR 36
>D79205-1|BAA11465.1| 51|Homo sapiens ribosomal protein L39
protein.
Length = 51
Score = 65.7 bits (153), Expect = 1e-10
Identities = 29/36 (80%), Positives = 32/36 (88%)
Frame = +1
Query: 31 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIR 138
MS+HKTF IKR LAKK KQNRPIPQW+RM+TGN IR
Sbjct: 1 MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIR 36
>BC070205-1|AAH70205.1| 51|Homo sapiens ribosomal protein L39
protein.
Length = 51
Score = 65.7 bits (153), Expect = 1e-10
Identities = 29/36 (80%), Positives = 32/36 (88%)
Frame = +1
Query: 31 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIR 138
MS+HKTF IKR LAKK KQNRPIPQW+RM+TGN IR
Sbjct: 1 MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIR 36
>BC001019-1|AAH01019.1| 51|Homo sapiens ribosomal protein L39
protein.
Length = 51
Score = 65.7 bits (153), Expect = 1e-10
Identities = 29/36 (80%), Positives = 32/36 (88%)
Frame = +1
Query: 31 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIR 138
MS+HKTF IKR LAKK KQNRPIPQW+RM+TGN IR
Sbjct: 1 MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIR 36
>AB061835-1|BAB79473.1| 51|Homo sapiens ribosomal protein L39
protein.
Length = 51
Score = 65.7 bits (153), Expect = 1e-10
Identities = 29/36 (80%), Positives = 32/36 (88%)
Frame = +1
Query: 31 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIR 138
MS+HKTF IKR LAKK KQNRPIPQW+RM+TGN IR
Sbjct: 1 MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIR 36
>AB209077-1|BAD92314.1| 70|Homo sapiens ribosomal protein L39
variant protein.
Length = 70
Score = 64.1 bits (149), Expect = 4e-10
Identities = 28/36 (77%), Positives = 32/36 (88%)
Frame = +1
Query: 31 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIR 138
MS+HKTF IK+ LAKK KQNRPIPQW+RM+TGN IR
Sbjct: 20 MSSHKTFKIKQFLAKKQKQNRPIPQWIRMKTGNKIR 55
>L05096-1|AAC15859.1| 51|Homo sapiens ribosomal protein L39
protein.
Length = 51
Score = 60.5 bits (140), Expect = 5e-09
Identities = 26/36 (72%), Positives = 31/36 (86%)
Frame = +1
Query: 31 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIR 138
MS+HKTF IKR LAKK KQNRPIPQW++M+ G+ IR
Sbjct: 1 MSSHKTFTIKRFLAKKQKQNRPIPQWIQMKPGSKIR 36
>BC012328-1|AAH12328.1| 51|Homo sapiens ribosomal protein L39-like
protein.
Length = 51
Score = 60.5 bits (140), Expect = 5e-09
Identities = 26/36 (72%), Positives = 31/36 (86%)
Frame = +1
Query: 31 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIR 138
MS+HKTF IKR LAKK KQNRPIPQW++M+ G+ IR
Sbjct: 1 MSSHKTFTIKRFLAKKQKQNRPIPQWIQMKPGSKIR 36
>AF548529-1|AAN52397.1| 51|Homo sapiens ribosomal protein L39-2
protein.
Length = 51
Score = 60.5 bits (140), Expect = 5e-09
Identities = 26/36 (72%), Positives = 31/36 (86%)
Frame = +1
Query: 31 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIR 138
MS+HKTF IKR LAKK KQNRPIPQW++M+ G+ IR
Sbjct: 1 MSSHKTFTIKRFLAKKQKQNRPIPQWIQMKPGSKIR 36
>AB063610-1|BAC19837.1| 51|Homo sapiens ribosomal protein L39-like
protein.
Length = 51
Score = 60.5 bits (140), Expect = 5e-09
Identities = 26/36 (72%), Positives = 31/36 (86%)
Frame = +1
Query: 31 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIR 138
MS+HKTF IKR LAKK KQNRPIPQW++M+ G+ IR
Sbjct: 1 MSSHKTFTIKRFLAKKQKQNRPIPQWIQMKPGSKIR 36
>AB063607-1|BAC19834.1| 29|Homo sapiens ribosomal protein L39-like
protein.
Length = 29
Score = 54.0 bits (124), Expect = 4e-07
Identities = 23/29 (79%), Positives = 26/29 (89%)
Frame = +1
Query: 31 MSAHKTFIIKRKLAKKLKQNRPIPQWVRM 117
MS+HKTF IKR LAKK KQNRPIPQW++M
Sbjct: 1 MSSHKTFTIKRFLAKKQKQNRPIPQWIQM 29
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,016,881
Number of Sequences: 237096
Number of extensions: 1346233
Number of successful extensions: 5758
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5758
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7141427170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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