Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12l23f
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.18 |||conserved fungal protein|Schizosaccharomyces pom...    29   0.70 
SPAC4A8.04 |isp6|prb1|vacuolar serine protease Isp6|Schizosaccha...    28   0.93 
SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr 1...    26   5.0  
SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac...    25   6.5  
SPBC20F10.04c |nse4|rad62|Smc5-6 complex non-SMC subunit Nse4|Sc...    25   6.5  
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce...    25   8.7  
SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   8.7  
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    25   8.7  

>SPAC22E12.18 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 336

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = -2

Query: 591 GVQAVERSVSMKELVSHLTDRGPAIVLVDAGLL--SCDLCKHNKLGSEQ*VG 442
           G++A+ RSVS K L     D      L+D G+L  SC+  K  KLGSE  VG
Sbjct: 124 GIEALLRSVSPKPLGYISEDWKTRGRLIDTGILWESCE--KIEKLGSEGIVG 173


>SPAC4A8.04 |isp6|prb1|vacuolar serine protease
           Isp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -3

Query: 335 HKHRSPPSANPSLATKGSTSKLTHRHSPLSFSPDLSESRFRS 210
           HK  + P+A P L+   + +     H  +   PDLSE  F++
Sbjct: 60  HKPHAGPNAAPLLSASNADTTGLDSHYIIVLQPDLSEQEFQA 101


>SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 221

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +2

Query: 56  ELPSFFFLPMLIVIALRNYISFLWTC*LT 142
           +L +F F+P+++ +   N +S +WT  L+
Sbjct: 183 QLFNFTFVPLVLQVIFANAVSMVWTAYLS 211


>SPCC18B5.11c |cds1||replication checkpoint kinase
           Cds1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = -3

Query: 419 IDTAAVFISQRPKRHYGSSRSLNGAFRY----HKHRSPPSANPSLATK 288
           ID     +   P++    S +L   + Y    H+HR+PPS++   AT+
Sbjct: 407 IDLINRMLEINPEKRISESEALQHPWFYTVSTHEHRTPPSSSEHEATE 454


>SPBC20F10.04c |nse4|rad62|Smc5-6 complex non-SMC subunit
           Nse4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 300

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 451 IGRYTFLM*SKSIQRQYSYLSAPNVITDP 365
           +G  +F    ++IQR+     APNV+T P
Sbjct: 136 VGPLSFRKKERNIQRRERLQKAPNVLTQP 164


>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 855

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
 Frame = -3

Query: 380 RHYGSSRSL-NGAFRYHKHRSPPSANPSLATKGSTSKLTHRHSPLSFSPDLSESRFRSSG 204
           RH   ++S+ N +   H   SP +  PS+ +      +T   S  S +  +   +F   G
Sbjct: 191 RHTADAQSITNASVHLHNSSSPLNRTPSVISDTLAVAITSNSSSNSSNNAIWAMKFSRDG 250

Query: 203 RF 198
           R+
Sbjct: 251 RY 252


>SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 289

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 488 HDNRPASTSTIAGPRSVRWETSSFIETDRS 577
           HD+ PA  ++ +       +TSSF+ET RS
Sbjct: 185 HDHSPAIYASESFNIKAEIDTSSFLETQRS 214


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -3

Query: 368 SSRSLNGAFRYHKHRSPPSANPSLATKGSTSKLTHRHSPLSFSPD 234
           SSR  + A   +   SPPS+  SL++       +   SP  F PD
Sbjct: 79  SSRIPDKAISQYYETSPPSSTSSLSSNNQLMNSSVILSPGQFLPD 123


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,416,133
Number of Sequences: 5004
Number of extensions: 47786
Number of successful extensions: 151
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)