Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12l21f
(485 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC071853-1|AAH71853.1| 356|Homo sapiens GREB1 protein protein. 33 0.70
AK092754-1|BAC03965.1| 615|Homo sapiens protein ( Homo sapiens ... 31 2.8
BC032587-1|AAH32587.1| 442|Homo sapiens tubby like protein 3 pr... 30 5.0
AF045583-1|AAC95431.1| 442|Homo sapiens tubby like protein 3 pr... 30 5.0
U13616-1|AAA64834.1| 4377|Homo sapiens ankyrin G protein. 29 8.7
AL592430-3|CAI40518.1| 4372|Homo sapiens ankyrin 3, node of Ranv... 29 8.7
AL359377-2|CAI41373.1| 4372|Homo sapiens ankyrin 3, node of Ranv... 29 8.7
AL359267-1|CAH73232.1| 4372|Homo sapiens ankyrin 3, node of Ranv... 29 8.7
>BC071853-1|AAH71853.1| 356|Homo sapiens GREB1 protein protein.
Length = 356
Score = 32.7 bits (71), Expect = 0.70
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = -1
Query: 299 KCRELKSSALTSVTRPEKLMMSDAPGGLQEPA--*PSRRRGSAALNNSPISLNKFEITMS 126
KC++L + L ++ RP L S PG +PA R G A P+SL + ++
Sbjct: 275 KCQQLAKNNLLALPRPSALGSSACPGRPGDPALLWAKARGGMGAAGLGPLSLLESDVASM 334
Query: 125 RMR 117
R+R
Sbjct: 335 RVR 337
>AK092754-1|BAC03965.1| 615|Homo sapiens protein ( Homo sapiens
cDNA FLJ35435 fis, clone SMINT2002620. ).
Length = 615
Score = 30.7 bits (66), Expect = 2.8
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = -1
Query: 467 AVASATTFSRASPPEAKDLRTRLKMRISP---SAEPTDAETLGTARTKLSRVP 318
A ++F R S DLRT R+ S+ TD++ LG+ RTK R P
Sbjct: 259 AFLKKSSFKRKSTSNLADLRTAHDARVPQRTLSSSSTDSQKLGSGRTKRWRSP 311
>BC032587-1|AAH32587.1| 442|Homo sapiens tubby like protein 3
protein.
Length = 442
Score = 29.9 bits (64), Expect = 5.0
Identities = 19/78 (24%), Positives = 33/78 (42%)
Frame = +1
Query: 85 HRDVDFEPNSQRILDIVISNLFNEIGELLRAADPLRRDGYAGSWSPPGASDIINFSGRVT 264
H+ + ++P + D ++S N E L + A W+ S ++NF GRVT
Sbjct: 332 HKQIPYQPQNNH--DSLLSRWQNRTMENL-----VELHNKAPVWNSDTQSYVLNFRGRVT 384
Query: 265 DVKADDFSSLHLRRVSYV 318
+F +H Y+
Sbjct: 385 QASVKNFQIVHKNDPDYI 402
>AF045583-1|AAC95431.1| 442|Homo sapiens tubby like protein 3
protein.
Length = 442
Score = 29.9 bits (64), Expect = 5.0
Identities = 19/78 (24%), Positives = 33/78 (42%)
Frame = +1
Query: 85 HRDVDFEPNSQRILDIVISNLFNEIGELLRAADPLRRDGYAGSWSPPGASDIINFSGRVT 264
H+ + ++P + D ++S N E L + A W+ S ++NF GRVT
Sbjct: 332 HKQIPYQPQNNH--DSLLSRWQNRTMENL-----VELHNKAPVWNSDTQSYVLNFRGRVT 384
Query: 265 DVKADDFSSLHLRRVSYV 318
+F +H Y+
Sbjct: 385 QASVKNFQLVHKNDPDYI 402
>U13616-1|AAA64834.1| 4377|Homo sapiens ankyrin G protein.
Length = 4377
Score = 29.1 bits (62), Expect = 8.7
Identities = 25/87 (28%), Positives = 36/87 (41%)
Frame = -1
Query: 485 SARETEAVASATTFSRASPPEAKDLRTRLKMRISPSAEPTDAETLGTARTKLSRVPT*LT 306
S+ E A+AT S+ P LRT +KM IS S E G K+ V T
Sbjct: 3698 SSGSLEKSAAATNTSKVDPK----LRTPIKMGISASTMTMKKEGPGEITDKIEAVMT--- 3750
Query: 305 RRKCRELKSSALTSVTRPEKLMMSDAP 225
C+ L++ +T ++ M P
Sbjct: 3751 --SCQGLENETITMISNTANSQMGVRP 3775
>AL592430-3|CAI40518.1| 4372|Homo sapiens ankyrin 3, node of Ranvier
(ankyrin G) protein.
Length = 4372
Score = 29.1 bits (62), Expect = 8.7
Identities = 25/87 (28%), Positives = 36/87 (41%)
Frame = -1
Query: 485 SARETEAVASATTFSRASPPEAKDLRTRLKMRISPSAEPTDAETLGTARTKLSRVPT*LT 306
S+ E A+AT S+ P LRT +KM IS S E G K+ V T
Sbjct: 3693 SSGSLEKSAAATNTSKVDPK----LRTPIKMGISASTMTMKKEGPGEITDKIEAVMT--- 3745
Query: 305 RRKCRELKSSALTSVTRPEKLMMSDAP 225
C+ L++ +T ++ M P
Sbjct: 3746 --SCQGLENETITMISNTANSQMGVRP 3770
>AL359377-2|CAI41373.1| 4372|Homo sapiens ankyrin 3, node of Ranvier
(ankyrin G) protein.
Length = 4372
Score = 29.1 bits (62), Expect = 8.7
Identities = 25/87 (28%), Positives = 36/87 (41%)
Frame = -1
Query: 485 SARETEAVASATTFSRASPPEAKDLRTRLKMRISPSAEPTDAETLGTARTKLSRVPT*LT 306
S+ E A+AT S+ P LRT +KM IS S E G K+ V T
Sbjct: 3693 SSGSLEKSAAATNTSKVDPK----LRTPIKMGISASTMTMKKEGPGEITDKIEAVMT--- 3745
Query: 305 RRKCRELKSSALTSVTRPEKLMMSDAP 225
C+ L++ +T ++ M P
Sbjct: 3746 --SCQGLENETITMISNTANSQMGVRP 3770
>AL359267-1|CAH73232.1| 4372|Homo sapiens ankyrin 3, node of Ranvier
(ankyrin G) protein.
Length = 4372
Score = 29.1 bits (62), Expect = 8.7
Identities = 25/87 (28%), Positives = 36/87 (41%)
Frame = -1
Query: 485 SARETEAVASATTFSRASPPEAKDLRTRLKMRISPSAEPTDAETLGTARTKLSRVPT*LT 306
S+ E A+AT S+ P LRT +KM IS S E G K+ V T
Sbjct: 3693 SSGSLEKSAAATNTSKVDPK----LRTPIKMGISASTMTMKKEGPGEITDKIEAVMT--- 3745
Query: 305 RRKCRELKSSALTSVTRPEKLMMSDAP 225
C+ L++ +T ++ M P
Sbjct: 3746 --SCQGLENETITMISNTANSQMGVRP 3770
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,439,734
Number of Sequences: 237096
Number of extensions: 1200392
Number of successful extensions: 2827
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2827
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4384610846
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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