Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12l20f
         (595 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.06 |||nicotinate phosphoribosyltransferase |Schizosacch...    36   0.006
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    27   2.1  
SPAC24B11.05 |||pyrimidine 5'-nucleotidase |Schizosaccharomyces ...    25   6.3  
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos...    25   6.3  
SPBC776.12c |hsk1||serine/threonine protein kinase Hsk1|Schizosa...    25   6.3  
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    25   6.3  

>SPAC1486.06 |||nicotinate phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 410

 Score = 35.5 bits (78), Expect = 0.006
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = +1

Query: 211 NQDGSVTWREWAPGAHSLHLRGEFNGWDSKSHPFAKKEYGKWEIQIPANPDGSCALKHDS 390
           NQ+     RE   G  +LHL  E   W  K+ P+ K+ + ++  +   +P+ S +L +DS
Sbjct: 46  NQEAYNWLREQIRGLRNLHLLPEEEQWLRKNCPYLKESFYEFMHEFEFDPENSISLNYDS 105

Query: 391 RVQ 399
             +
Sbjct: 106 ETK 108


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +1

Query: 415 NLYRISPWASYVKPHEGFTYQHFIYKPEQPY 507
           +LY + P+A +V P+ G+ YQ+ +Y  E  Y
Sbjct: 26  HLY-VWPFALFVYPYIGYVYQNKLYSEEVRY 55


>SPAC24B11.05 |||pyrimidine 5'-nucleotidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 226

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +1

Query: 52  LEKLFERDGYLKPYEREIRRRYACY 126
           LEK+ ++D  L+    E+R++Y C+
Sbjct: 85  LEKVIKKDEVLREMLLELRKKYKCW 109


>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 790

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 421 YRISPWASYVKPHEGFTYQ 477
           Y +  W  Y+K HEG T +
Sbjct: 30  YSLKSWLRYIKTHEGSTLE 48


>SPBC776.12c |hsk1||serine/threonine protein kinase
           Hsk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +1

Query: 253 AHSLHLRGEFNGWDSKSHPFAKKEYGKWEIQIPANPD 363
           A  LH     N WD +S    +  +GK   +IP N D
Sbjct: 85  AEDLHYGRYINDWDIQSEVLKESSFGK--EKIPVNED 119


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 218 MAPLRGASGLQERIAYIFEENSMDGTRRAIHSLKR 322
           M PL G   ++ R  +IFE++  +  R + H LK+
Sbjct: 425 MRPLPGQCNVKVRRDHIFEDSYAEIMRYSAHDLKK 459


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,808,070
Number of Sequences: 5004
Number of extensions: 64540
Number of successful extensions: 159
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)