Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12l20f
         (595 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    23   3.0  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   6.9  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   6.9  
EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    21   9.1  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   9.1  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    21   9.1  

>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
 Frame = +3

Query: 351 CKSRRFVCIETRLPCPNH--SERQL 419
           C + +F C +T  PC  H  S+R L
Sbjct: 93  CSAEKFECSKTSNPCLPHRNSDRDL 117


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +3

Query: 273 RRIQWMGLEEP 305
           +R +WMG+ EP
Sbjct: 349 KRCKWMGIHEP 359


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +3

Query: 273 RRIQWMGLEEP 305
           +R +WMG+ EP
Sbjct: 349 KRCKWMGIHEP 359


>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 118 ACYKDIWDRIESWDGGLEAFTKGYKY 195
           A YK++ +++ S   GLE   KG  Y
Sbjct: 126 AQYKEMEEKVSSTLSGLEGELKGTFY 151


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +1

Query: 418 LYRISPWASYVKPHEGFTYQ 477
           LY+ SP+  Y  P E   YQ
Sbjct: 82  LYQQSPYLMYENPDEEKRYQ 101


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 118 ACYKDIWDRIESWDGGLEAFTKGYKY 195
           A YK++ +++ S   GLE   KG  Y
Sbjct: 142 AQYKEMEEKVSSTLSGLEGELKGTFY 167


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,739
Number of Sequences: 438
Number of extensions: 4467
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)