Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12l13f
         (609 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    24   1.2  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    23   1.5  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   3.5  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   3.5  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   3.5  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   4.6  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    21   6.1  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    21   6.1  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 29/129 (22%), Positives = 55/129 (42%), Gaps = 5/129 (3%)
 Frame = +1

Query: 154 GITGEPSEXXXXXXXXXXXXXPGLNKYTGLPHSQRYHELLRKRLGLPVWE---YKNDFMR 324
           G T  P+                +N +  +  S+     L KR   PV +    KN F  
Sbjct: 41  GTTSHPTSKLVPPDERITYSWTEINAFANVSPSKTKFFNLIKRKDSPVQKKHILKNVF-G 99

Query: 325 LLNTHQCIVLVGETGSGKTTQIPQWSVEFAAVSGLGKAKGVACTQPRRVAAMSVAQRVA- 501
           +    + + ++G +G+GKTT +   ++ F   S L    G+ C     V++ ++A + A 
Sbjct: 100 VAYPGELLAILGSSGAGKTTLLN--TLTFHTSSNL-TVSGLRCVNGIPVSSKTLASQSAY 156

Query: 502 -EEMDVALG 525
            ++ D+ +G
Sbjct: 157 VQQDDLFIG 165


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 16/64 (25%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
 Frame = +1

Query: 340 QCIVLVGETGSGKTTQIPQWSVEFAAVSGLGKAKGVACTQPRRVAAMSVAQRVA--EEMD 513
           + + ++G +G+GKTT +   ++ F   S L    G+ C     V++ ++A + A  ++ D
Sbjct: 105 ELLAILGSSGAGKTTLLN--TLTFHTSSNL-TVSGLRCVNGIPVSSKTLASQSAYVQQDD 161

Query: 514 VALG 525
           + +G
Sbjct: 162 LFIG 165


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = +2

Query: 527 RKLVTAFVLKTVQGHKH 577
           RKL++A+ + TV GH++
Sbjct: 380 RKLLSAWYMNTVLGHQN 396


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = +2

Query: 527 RKLVTAFVLKTVQGHKH 577
           RKL++A+ + TV GH++
Sbjct: 272 RKLLSAWYMNTVLGHQN 288


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 193 SCW*LLLKVHR*FQISQQPQPS 128
           +CW L       +QIS QP PS
Sbjct: 322 NCWSLTSSPPPPYQISAQPTPS 343


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 217 PGLNKYTGLPHSQRYHELLRKR 282
           PG   + G P++Q   +L+R+R
Sbjct: 366 PGYPFFGGFPNAQLLQQLIRER 387


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 458 NQDEWLLCLLLRG 496
           N+  WL CLLL G
Sbjct: 3   NKTYWLCCLLLLG 15


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 458 NQDEWLLCLLLRG 496
           N+  WL CLLL G
Sbjct: 3   NKTYWLCCLLLLG 15


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,408
Number of Sequences: 336
Number of extensions: 2929
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15457268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)