Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12l13f
         (609 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   1.8  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   1.8  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   1.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   4.1  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    21   7.1  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    21   7.1  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   7.1  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    21   9.4  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    21   9.4  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 198 HHGYQYTWTK*IYRSSAFTALP*AITKTFRT 290
           H+G +  WTK IY    F  LP  +T    T
Sbjct: 246 HNGGEIAWTKVIY-VKRFFGLPVGVTAAIPT 275


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 198 HHGYQYTWTK*IYRSSAFTALP*AITKTFRT 290
           H+G +  WTK IY    F  LP  +T    T
Sbjct: 246 HNGGEIAWTKVIY-VKRFFGLPVGVTAAIPT 275


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 198 HHGYQYTWTK*IYRSSAFTALP*AITKTFRT 290
           H+G +  WTK IY    F  LP  +T    T
Sbjct: 246 HNGGEIAWTKVIY-VKRFFGLPVGVTAAIPT 275


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 168 TFRSNYQHDYHHGYQYTWTK*IYRSSAFTAL 260
           T  +++QH++  G +YT+   + RS   T+L
Sbjct: 13  TVAADFQHNWQVGNEYTY---LVRSRTLTSL 40


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -3

Query: 532 LPDPKPHPFL 503
           LPDPK  PFL
Sbjct: 204 LPDPKKTPFL 213


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -3

Query: 532 LPDPKPHPFL 503
           LPDPK  PFL
Sbjct: 204 LPDPKKTPFL 213


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 262 GNAVNAEDRYIYLVQ 218
           G A+N  +RY+Y  Q
Sbjct: 552 GRAINVANRYVYASQ 566


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -3

Query: 601 YRLSCILEVF 572
           YR+SC+L +F
Sbjct: 65  YRISCLLSIF 74


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -3

Query: 601 YRLSCILEVF 572
           YR+SC+L +F
Sbjct: 33  YRISCLLSIF 42


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,875
Number of Sequences: 438
Number of extensions: 3564
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)