Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12l12r
         (753 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0733 - 19791745-19791906,19792072-19792173,19792246-197923...    28   6.9  

>09_04_0733 -
           19791745-19791906,19792072-19792173,19792246-19792331,
           19792655-19792926,19793430-19793521,19793615-19793730,
           19794206-19794389,19794467-19794599,19794981-19795075
          Length = 413

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = +1

Query: 85  TKSDKICVLDYKKVV-FLQITVLRNIAFHETDISLA 189
           T SDK+  LD++++V FLQ    RN A HE ++ L+
Sbjct: 360 TWSDKLKKLDFQEMVMFLQHLPTRNWAHHELEMVLS 395


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,450,118
Number of Sequences: 37544
Number of extensions: 230129
Number of successful extensions: 344
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 344
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)