Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV12l12f
         (579 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    28   1.1  
SPBC106.07c |||N alpha-acetyltransferase Nat2 |Schizosaccharomyc...    27   2.6  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    25   6.1  
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    25   8.0  

>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 558 GFMIPRRHRHIFMYELNTVRIFYYF 484
           G ++ +R+ HI  Y  NTV+++Y F
Sbjct: 572 GLLLEKRNMHIQRYGPNTVKLYYAF 596


>SPBC106.07c |||N alpha-acetyltransferase Nat2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 167

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 96  NVEYKADLSGTHFVPPHQNPPPYVTQPQ 179
           NV  +  +S +  +PP  +PPP +T  Q
Sbjct: 25  NVPVRRSISSSSSIPPSSSPPPRLTITQ 52


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
 Frame = +3

Query: 273 YTCPSCNTAIVTRVERVSTTKTHLFAALLCLIGCWPCVCIPYCT-NSCQN--AEH-YCPN 440
           + C +CN  +    E  S          LC+  C  C   P C  N+  N  A H  C N
Sbjct: 49  FKCVNCNKKLDPSSEDFSQDDQKQIFCKLCVDICNGC-STPICEFNAVSNSQANHPCCSN 107

Query: 441 CSAYI 455
           C A+I
Sbjct: 108 CRAFI 112


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +3

Query: 255 GPDPSHYTCPSCNTAIVTRVERVSTTKTHLFAALL 359
           G  P   + PSC      R E +   +THL  AL+
Sbjct: 28  GEKPFECSYPSCKKRFTRRDELIRHVRTHLRKALV 62


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,381,494
Number of Sequences: 5004
Number of extensions: 46088
Number of successful extensions: 127
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)