Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12l12f
(579 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0538 - 4670159-4670251,4670332-4670393,4670476-4670599,467... 29 2.7
08_02_0583 + 19006495-19006683,19006954-19007060,19007124-190072... 29 3.5
04_04_0581 + 26365806-26366234 29 3.5
09_04_0048 - 14188102-14188146,14188656-14188790 28 4.7
05_01_0142 - 940421-940701,941262-941574 28 4.7
12_02_0142 - 14306325-14306490,14306584-14306687,14306788-143069... 28 6.2
10_07_0194 - 13957709-13957925,13960065-13960129,13960281-139604... 28 6.2
11_01_0485 + 3728686-3728863,3729933-3730095,3730508-3730549,373... 27 8.2
09_04_0689 - 19480409-19480599,19480780-19480889,19481032-194811... 27 8.2
03_05_0051 - 20288456-20291728 27 8.2
02_03_0408 - 18692176-18692278,18692590-18692669,18692764-186928... 27 8.2
>08_01_0538 -
4670159-4670251,4670332-4670393,4670476-4670599,
4670797-4670859,4671483-4671533,4671627-4671691,
4671797-4671935,4672332-4672388,4672729-4672827,
4673266-4673337,4673426-4673494,4673617-4673762,
4673881-4674157
Length = 438
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +3
Query: 267 SHYTCPSCNTAIVTRVER 320
SHY CPSC TAI R R
Sbjct: 15 SHYPCPSCPTAIPIRDRR 32
>08_02_0583 +
19006495-19006683,19006954-19007060,19007124-19007289,
19007362-19007458,19008011-19008366
Length = 304
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 136 YRRIRTRHRTSPNHNQEYILHILPYLLN 219
YR TR + +++ +Y+L++LP L N
Sbjct: 88 YRLSNTREQIQSSYSSDYLLYVLPLLFN 115
>04_04_0581 + 26365806-26366234
Length = 142
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -1
Query: 465 CSFRCTRCSSGNNAQHFGSYSCSKECKR 382
C RC R SS ++ H S C +CK+
Sbjct: 110 CGKRCYRSSSSSSLSHIPSTKCVVKCKK 137
>09_04_0048 - 14188102-14188146,14188656-14188790
Length = 59
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +3
Query: 267 SHYTCPSCNTAIVTR 311
SHY CPSC TAI R
Sbjct: 15 SHYPCPSCPTAIPKR 29
>05_01_0142 - 940421-940701,941262-941574
Length = 197
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 117 LSGTHFVPPHQNPPPYVTQPQPG 185
++G H PPHQ PP P PG
Sbjct: 23 VAGGHGYPPHQGYPPQGYPPPPG 45
>12_02_0142 -
14306325-14306490,14306584-14306687,14306788-14306967,
14307155-14307253,14307346-14307535,14307722-14307748,
14308190-14308506,14308532-14308675,14308799-14308905,
14309085-14309357,14309470-14309827
Length = 654
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/53 (24%), Positives = 24/53 (45%)
Frame = -2
Query: 200 ICRIYSWLWLGDVRWRVLMRRYEVCARQICFIFNIGHFSLVRHKSRTKFPVIR 42
IC ++ V+W + + + + F FNI +F H + FP++R
Sbjct: 476 ICNSEKFVSESCVKWVKSINKEQKLPKLDLFSFNISYFFFASHPIKLFFPIVR 528
>10_07_0194 -
13957709-13957925,13960065-13960129,13960281-13960454,
13960847-13960889,13961081-13961225,13961305-13961413,
13961694-13961822,13961935-13962031,13962639-13962703,
13963275-13963439
Length = 402
Score = 27.9 bits (59), Expect = 6.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 16 DSRLWCSYNRITGNLVRDLCLT 81
+S+ WC R G++V DLC T
Sbjct: 335 ESQAWCGLTRSNGDVVADLCGT 356
>11_01_0485 +
3728686-3728863,3729933-3730095,3730508-3730549,
3730833-3730927,3731273-3731334,3731416-3731507,
3731587-3731722,3731818-3731904,3732430-3732519,
3732969-3733071,3733616-3733716,3733837-3733971,
3734006-3734093,3734484-3734544,3734626-3734689,
3735219-3735347
Length = 541
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = -1
Query: 471 NCCSFRCTRCSSGNNAQHFGSYSCSKECKRMANNLLSKEEQQTDVSLSWKHV 316
N F C +C G + G+Y CS+ +N + +Q+T +S +H+
Sbjct: 340 NHADFLCPQCGLGCDRAFCGAYWCSQGVNSSQHNPIC--DQETFKMISQRHI 389
>09_04_0689 -
19480409-19480599,19480780-19480889,19481032-19481117,
19481410-19481523,19481697-19482066,19482216-19482346,
19482628-19482736,19482901-19483022,19483113-19483219,
19483447-19483551,19483654-19483812,19484071-19484126,
19484200-19484251,19486724-19486821,19487086-19487210
Length = 644
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = +3
Query: 105 YKADLSGTHF--VPPHQNPPPYVTQPQPGI 188
Y+ D GT + +P +Q PP Y+TQ G+
Sbjct: 50 YQLDTQGTRYQPIPVYQVPPRYLTQGIDGV 79
>03_05_0051 - 20288456-20291728
Length = 1090
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -3
Query: 133 KCVPDKSALYSTLAILV*LDTNHELNSQL 47
+C+ DK +S + ++V DTNH +NSQL
Sbjct: 351 ECLSDKDC-WSLIKMIVFDDTNHLINSQL 378
>02_03_0408 -
18692176-18692278,18692590-18692669,18692764-18692890,
18694016-18694051,18695832-18696085
Length = 199
Score = 27.5 bits (58), Expect = 8.2
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 9/69 (13%)
Frame = +3
Query: 264 PSHYTCPSCNTAIVTRVERVST--------TKTHLFAALLCLIGCWPCVCIPYCTNSCQ- 416
P+ + C +C A V+ + T +K L + + C++ VC + C
Sbjct: 68 PAPFHCQACGAAAVSSLRSEDTIFFPVHGRSKPSLASVVACMMPFMMGVCFLCPSMDCLW 127
Query: 417 NAEHYCPNC 443
+ HYCP+C
Sbjct: 128 HKYHYCPSC 136
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,461,729
Number of Sequences: 37544
Number of extensions: 314811
Number of successful extensions: 1076
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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