Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12l12f
(579 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g12560.1 68417.m01982 F-box family protein contains F-box dom... 30 1.3
At5g25220.1 68418.m02990 homeobox protein knotted-1 like 3 (KNAT... 29 1.7
At3g45840.1 68416.m04961 DC1 domain-containing protein contains ... 29 3.0
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 29 3.0
At5g42290.1 68418.m05147 transcription activator-related contain... 28 3.9
At5g40630.1 68418.m04932 ubiquitin family protein contains INTER... 28 3.9
At5g48920.1 68418.m06052 hydroxyproline-rich glycoprotein family... 28 5.2
At4g30310.3 68417.m04309 ribitol kinase, putative similar to rib... 28 5.2
At4g30310.2 68417.m04308 ribitol kinase, putative similar to rib... 28 5.2
At4g30310.1 68417.m04307 ribitol kinase, putative similar to rib... 28 5.2
At4g03550.1 68417.m00486 glycosyl transferase family 48 protein ... 28 5.2
At3g44630.3 68416.m04798 disease resistance protein RPP1-WsB-lik... 27 6.8
At3g44630.2 68416.m04800 disease resistance protein RPP1-WsB-lik... 27 6.8
At3g44630.1 68416.m04799 disease resistance protein RPP1-WsB-lik... 27 6.8
At5g63910.1 68418.m08025 expressed protein 27 9.0
At3g12980.1 68416.m01617 histone acetyltransferase 5 (HAC5) iden... 27 9.0
At1g66610.1 68414.m07569 seven in absentia (SINA) protein, putat... 27 9.0
>At4g12560.1 68417.m01982 F-box family protein contains F-box domain
Pfam:PF00646
Length = 413
Score = 29.9 bits (64), Expect = 1.3
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = -1
Query: 522 MYELNTVRIFYYFVESINCCSFRCTRCSSGNNAQHFGSYSCSKECKRMANNLLSKEEQQ 346
+ ELN ++ ++ +ES + R C S +A+ S S CK NN+ ++EQQ
Sbjct: 328 LLELNNTKLVWFDLESKKMSTLRIKDCPSSYSAELVVS-SLVLGCKGDLNNIKYRKEQQ 385
>At5g25220.1 68418.m02990 homeobox protein knotted-1 like 3 (KNAT3)
identical to homeobox protein knotted-1 like 3 (KNAT3)
SP:P48000 from [Arabidopsis thaliana]
Length = 431
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = +3
Query: 114 DLSGTHFVPPHQNPPPYVTQPQP 182
DLS HF HQ PPP P P
Sbjct: 11 DLSFNHFTDQHQPPPPQPPPPPP 33
>At3g45840.1 68416.m04961 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 633
Score = 28.7 bits (61), Expect = 3.0
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -1
Query: 456 RCTRCSSGNNAQHFGSYSCS-KECKRM 379
RC CS N +++G Y C+ +C R+
Sbjct: 24 RCEGCSFRNQGEYYGGYRCNDSDCNRV 50
>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}, RNA Binding Protein 47
[Nicotiana plumbaginifolia] GI:9663769; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 481
Score = 28.7 bits (61), Expect = 3.0
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +3
Query: 93 ANVEYKADLSGTHFVPPHQN--PPPYVTQPQP 182
++ E S ++ +PPHQ+ PPPY P P
Sbjct: 372 SSTENNGASSSSYMMPPHQSYPPPPYGYMPSP 403
>At5g42290.1 68418.m05147 transcription activator-related contains
weak similarity to beta-cell E-box transcription
activator 1 gi|529197|gb|AAA65702
Length = 110
Score = 28.3 bits (60), Expect = 3.9
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +3
Query: 141 PHQNPPPYVTQPQP 182
PHQ+ PPY++Q QP
Sbjct: 18 PHQHQPPYISQMQP 31
>At5g40630.1 68418.m04932 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 165
Score = 28.3 bits (60), Expect = 3.9
Identities = 12/49 (24%), Positives = 22/49 (44%)
Frame = -1
Query: 468 CCSFRCTRCSSGNNAQHFGSYSCSKECKRMANNLLSKEEQQTDVSLSWK 322
C F C R +GNN + S S S ++++ S + ++ W+
Sbjct: 10 CIGFGCGRIGTGNNKRSSSSSSSSSSFSSLSSSSSSSSSSCNNNNIKWE 58
>At5g48920.1 68418.m06052 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 205
Score = 27.9 bits (59), Expect = 5.2
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +3
Query: 129 HFVPPHQNPPPYVTQPQP 182
HF PPHQ PP P P
Sbjct: 48 HFSPPHQPPPSPYPHPHP 65
>At4g30310.3 68417.m04309 ribitol kinase, putative similar to
ribitol kinase [Klebsiella pneumoniae]
gi|2905643|gb|AAC26495
Length = 451
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +1
Query: 28 WCSYNRITGNLVRDLCLTKLKWPML 102
W SY R TG+ R LC T KW L
Sbjct: 59 WLSY-RATGDDTRSLCTTVCKWTYL 82
>At4g30310.2 68417.m04308 ribitol kinase, putative similar to
ribitol kinase [Klebsiella pneumoniae]
gi|2905643|gb|AAC26495
Length = 579
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +1
Query: 28 WCSYNRITGNLVRDLCLTKLKWPML 102
W SY R TG+ R LC T KW L
Sbjct: 177 WLSY-RATGDDTRSLCTTVCKWTYL 200
>At4g30310.1 68417.m04307 ribitol kinase, putative similar to
ribitol kinase [Klebsiella pneumoniae]
gi|2905643|gb|AAC26495
Length = 499
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +1
Query: 28 WCSYNRITGNLVRDLCLTKLKWPML 102
W SY R TG+ R LC T KW L
Sbjct: 177 WLSY-RATGDDTRSLCTTVCKWTYL 200
>At4g03550.1 68417.m00486 glycosyl transferase family 48 protein
contains Pfam profile: PF02364 1,3-beta-glucan synthase
Length = 1780
Score = 27.9 bits (59), Expect = 5.2
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 28 WCSYNRITGNLVRDLCLTKLKWPM 99
W +Y+ I D C +KLKWP+
Sbjct: 249 WRNYDDINEYFWTDRCFSKLKWPL 272
>At3g44630.3 68416.m04798 disease resistance protein RPP1-WsB-like
(TIR-NBS-LRR class), putative domain signature
TIR-NBS-LRR exists, suggestive of a disease resistance
protein., closest Col-0 homolog to RPP1-WsB
Length = 1240
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 134 EVCARQICFIFNIGHFSLVRHKSRTKFPVIRLY 36
E+ +QI + + FS VRH R K +IR++
Sbjct: 561 EISWKQIVQVLLLNKFSHVRHTKRNKSQIIRMH 593
>At3g44630.2 68416.m04800 disease resistance protein RPP1-WsB-like
(TIR-NBS-LRR class), putative domain signature
TIR-NBS-LRR exists, suggestive of a disease resistance
protein., closest Col-0 homolog to RPP1-WsB
Length = 1214
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 134 EVCARQICFIFNIGHFSLVRHKSRTKFPVIRLY 36
E+ +QI + + FS VRH R K +IR++
Sbjct: 561 EISWKQIVQVLLLNKFSHVRHTKRNKSQIIRMH 593
>At3g44630.1 68416.m04799 disease resistance protein RPP1-WsB-like
(TIR-NBS-LRR class), putative domain signature
TIR-NBS-LRR exists, suggestive of a disease resistance
protein., closest Col-0 homolog to RPP1-WsB
Length = 1214
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 134 EVCARQICFIFNIGHFSLVRHKSRTKFPVIRLY 36
E+ +QI + + FS VRH R K +IR++
Sbjct: 561 EISWKQIVQVLLLNKFSHVRHTKRNKSQIIRMH 593
>At5g63910.1 68418.m08025 expressed protein
Length = 500
Score = 27.1 bits (57), Expect = 9.0
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -1
Query: 276 YNVKDQVPFALLLVRLPRPVEE 211
Y+VKD V L VRLP P+EE
Sbjct: 103 YHVKDFVERFNLTVRLPTPIEE 124
>At3g12980.1 68416.m01617 histone acetyltransferase 5 (HAC5) identical
to HAC5 (GI:21105780) [Arabidopsis thaliana]; similar to
CREB-binding protein GB:S39162 from [Homo sapiens]
Length = 1670
Score = 27.1 bits (57), Expect = 9.0
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Frame = -1
Query: 492 YYFVESINCCSFRCTRCSSGNN--AQHFGSYSCSKECKRMANNLLSKEEQQTDVSLSWKH 319
+ V +CC CT SGN ++ +C + N + KE+ V+ KH
Sbjct: 1375 FIMVHLQHCCKHCCTLMVSGNRWVCNQCKNFQICDKCHEVEENRVEKEKH--PVNQKEKH 1432
Query: 318 VL 313
VL
Sbjct: 1433 VL 1434
>At1g66610.1 68414.m07569 seven in absentia (SINA) protein, putative
similar to SIAH1 protein [Brassica napus var. napus]
GI:7657876; contains Pfam profile PF03145: Seven in
absentia protein family
Length = 366
Score = 27.1 bits (57), Expect = 9.0
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +3
Query: 399 CTNSCQNAEHYCPNCSAYIG 458
C++ C N + CP CS IG
Sbjct: 77 CSSCCTNVSNKCPYCSLAIG 96
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,445,984
Number of Sequences: 28952
Number of extensions: 253262
Number of successful extensions: 1054
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1031
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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