Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12l11f
(583 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52835| Best HMM Match : vATP-synt_E (HMM E-Value=2.1e-05) 51 8e-07
SB_50642| Best HMM Match : Spectrin (HMM E-Value=1) 32 0.39
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_5418| Best HMM Match : Spectrin (HMM E-Value=1.50001e-40) 29 2.8
SB_57632| Best HMM Match : Fibrinogen_C (HMM E-Value=8) 29 2.8
SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_20174| Best HMM Match : DedA (HMM E-Value=3.7) 28 4.8
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0) 28 4.8
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_29067| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
>SB_52835| Best HMM Match : vATP-synt_E (HMM E-Value=2.1e-05)
Length = 288
Score = 50.8 bits (116), Expect = 8e-07
Identities = 25/61 (40%), Positives = 38/61 (62%)
Frame = +1
Query: 367 KVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQALFQLMEPTVTIRVRQTDKALV 546
K E + +LDEA +RL +V +D Y +++ LI Q L+QL+E V IR R+ D +LV
Sbjct: 68 KAEEIDAKRILDEAVERLGKVTQDQGKYQQIIQGLITQGLYQLLESKVLIRCRKQDVSLV 127
Query: 547 E 549
+
Sbjct: 128 K 128
>SB_50642| Best HMM Match : Spectrin (HMM E-Value=1)
Length = 739
Score = 31.9 bits (69), Expect = 0.39
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 352 RLKVLKVREDHVRNVLDEARKRLAEV 429
R+ LK +ED ++N+LDE R + EV
Sbjct: 147 RINTLKTKEDEIKNILDEQRGKAEEV 172
>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1011
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/66 (28%), Positives = 30/66 (45%)
Frame = -1
Query: 406 LHQVHYVRDLHALSVPSDELGSACSKIGSSSEVQPASPSFHSIP*S*DVAAGQDGPFRC* 227
+HQVH VR +H + + L + + S+ P++PS S P + + P
Sbjct: 618 VHQVHLVRLVHLAHLCTCTLSTPSTPSTPSTRSTPSTPSTPSTPSTPSTPSTPSTPSLTH 677
Query: 226 TPPRPS 209
TP PS
Sbjct: 678 TPSTPS 683
>SB_5418| Best HMM Match : Spectrin (HMM E-Value=1.50001e-40)
Length = 514
Score = 29.1 bits (62), Expect = 2.8
Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = +1
Query: 379 DHVRNVLDEARKRLAEVPK-DTKLYSELLVTLIVQALFQLMEPTVTIRVRQTDKALVESL 555
D V L+E R E+ T +L L+ FQL + + +RQTD L E L
Sbjct: 164 DLVHAQLEEVNHRWDELCNHSTGRQQKLEEALLQLGQFQLAFQELLVWLRQTDSTLDEQL 223
Query: 556 LGKAQQDYK 582
K Q D K
Sbjct: 224 AKKVQGDVK 232
>SB_57632| Best HMM Match : Fibrinogen_C (HMM E-Value=8)
Length = 214
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Frame = -1
Query: 397 VHYVRDLHALSVP-----SDELGSACSKIGSSSEVQPASPSFHSIP*S*DVAAGQDGP 239
++Y++D H P + E G A + + S S A P F SIP D + +DGP
Sbjct: 19 LYYLQDTHHNWYPVYCDFTSEAGKAWTLVLSFSYANHAKPEFFSIPFLDDGSLSEDGP 76
>SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2992
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = +1
Query: 355 LKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLV 465
LK+LK R H RN EA+++ E ++TK++ ++ +
Sbjct: 2941 LKILKERRMHARN---EAKRQAIEKERETKIHRKIAI 2974
>SB_20174| Best HMM Match : DedA (HMM E-Value=3.7)
Length = 228
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/61 (19%), Positives = 27/61 (44%)
Frame = -2
Query: 441 GVLWHFSQALASFIKYITYVIFTHFQYLQTSLVQHVRRXXXXXXXXXXXXLFIVFHNLET 262
G L H + + ++++T + H Q+L ++++ H+R V +L+
Sbjct: 55 GHLRHLTSTVIGHLQHLTSTVIGHLQHLTSTVIGHLRHLTSTVIGHLQHLTSTVIGHLQN 114
Query: 261 L 259
L
Sbjct: 115 L 115
Score = 27.9 bits (59), Expect = 6.4
Identities = 7/36 (19%), Positives = 24/36 (66%)
Frame = -2
Query: 438 VLWHFSQALASFIKYITYVIFTHFQYLQTSLVQHVR 331
V++ ++ + ++++T+ + H Q+L ++++ H+R
Sbjct: 23 VIYTITRTVIGHLQHLTFTVIGHLQHLTSTVIGHLR 58
>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
Length = 2858
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/37 (29%), Positives = 24/37 (64%)
Frame = +1
Query: 346 QARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSE 456
QA L+ + +D+++ D +KRLA++ + ++YS+
Sbjct: 2459 QAELEAARQSKDNLQEDFDNLQKRLAQLEAEQEIYSK 2495
>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6406
Score = 27.9 bits (59), Expect = 6.4
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +1
Query: 397 LDEARKRLAEVPK-DTKLYSELLVTLIVQALFQLMEPTVTIRVRQTDKALVESLLGKAQQ 573
L+E R E+ T +L L+ FQL + + +RQTD L E L K Q
Sbjct: 5016 LEEVNHRWDELCNHSTGRQQKLEEALLQLGQFQLAFQELLVWLRQTDSTLDEQLAKKVQG 5075
Query: 574 DYK 582
D K
Sbjct: 5076 DVK 5078
>SB_29067| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 454
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 231 HRKGPSCPAATSQDYGIL*KEGEAG*TSEEDPIFEHAEPS 350
H K SC + D+ L GEAG TSE +P + +P+
Sbjct: 23 HWKSNSCKMDSDSDWDSL--SGEAGPTSEPEPTPRNLQPT 60
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,573,768
Number of Sequences: 59808
Number of extensions: 290091
Number of successful extensions: 825
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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