Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV12l10r
(718 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 201 3e-52
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 199 1e-51
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 199 2e-51
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 195 3e-50
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 169 2e-42
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 90 1e-18
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 90 1e-18
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 89 3e-18
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 89 3e-18
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 87 8e-18
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 87 8e-18
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 87 8e-18
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 87 1e-17
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 86 2e-17
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 85 4e-17
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 82 3e-16
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 82 3e-16
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 81 5e-16
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 81 5e-16
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 81 7e-16
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 81 1e-15
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 81 1e-15
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 79 2e-15
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 79 4e-15
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 77 9e-15
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 77 1e-14
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 77 2e-14
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 72 3e-13
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 72 4e-13
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 72 4e-13
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 70 1e-12
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 69 2e-12
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 68 7e-12
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 67 1e-11
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 66 2e-11
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 66 3e-11
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 61 6e-10
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 58 4e-09
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 58 6e-09
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 58 6e-09
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 58 6e-09
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 57 1e-08
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 57 1e-08
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 57 1e-08
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 56 3e-08
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 55 5e-08
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 55 5e-08
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 54 7e-08
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 53 2e-07
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 52 3e-07
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 52 4e-07
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 52 4e-07
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 50 1e-06
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 50 2e-06
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 49 4e-06
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 48 6e-06
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 48 8e-06
At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative EUKARY... 48 8e-06
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 47 1e-05
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 46 3e-05
At1g60930.1 68414.m06858 DNA helicase, putative strong similarit... 45 4e-05
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 44 1e-04
At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative si... 44 1e-04
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 42 3e-04
At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly ... 42 3e-04
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 42 4e-04
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 42 4e-04
At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative simila... 41 0.001
At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical... 40 0.002
At3g02060.1 68416.m00169 DEAD/DEAH box helicase, putative simila... 40 0.002
At2g01440.1 68415.m00067 ATP-dependent DNA helicase, putative 38 0.005
At1g12700.1 68414.m01473 helicase domain-containing protein / pe... 37 0.012
At4g37020.1 68417.m05244 expressed protein 36 0.020
At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein heli... 35 0.047
At1g35530.1 68414.m04411 DEAD/DEAH box helicase, putative low si... 34 0.082
At3g43920.1 68416.m04701 ribonuclease III family protein similar... 32 0.33
At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA ... 32 0.44
At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /... 32 0.44
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 30 1.3
At4g32700.1 68417.m04655 DNA-directed DNA polymerase family prot... 30 1.3
At1g03950.1 68414.m00380 SNF7 family protein contains Pfam domai... 30 1.3
At5g01710.1 68418.m00088 expressed protein 30 1.8
At3g24340.1 68416.m03056 SNF2 domain-containing protein / helica... 29 2.3
At5g04960.1 68418.m00525 pectinesterase family protein contains ... 29 4.1
At2g41210.1 68415.m05089 phosphatidylinositol-4-phosphate 5-kina... 29 4.1
At1g05480.1 68414.m00557 SNF2 domain-containing protein / helica... 28 7.1
At5g42120.1 68418.m05128 lectin protein kinase family protein co... 27 9.4
At4g01020.1 68417.m00137 helicase domain-containing protein / IB... 27 9.4
At1g01770.1 68414.m00096 expressed protein 27 9.4
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 201 bits (491), Expect = 3e-52
Identities = 98/153 (64%), Positives = 115/153 (75%)
Frame = -2
Query: 717 ELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREV 538
E EEWKLETLCDLY+TL+I Q+VIF NTRRKVDWLT+ M RD TVSA HGDMDQ R++
Sbjct: 260 EKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDI 319
Query: 537 IMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXI 358
IMR+FR+GSSRVLITTDLLARGIDVQQVS VIN+DLP+ ENY I
Sbjct: 320 IMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAI 379
Query: 357 NFVTEADRRALKDIEDFYHTSIVEMPSDVANLI 259
NFVT D R L DI+ FY+ + E+PS+VA+L+
Sbjct: 380 NFVTRDDERMLFDIQKFYNVVVEELPSNVADLL 412
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 199 bits (486), Expect = 1e-51
Identities = 97/153 (63%), Positives = 116/153 (75%)
Frame = -2
Query: 717 ELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREV 538
E E+WKLETLCDLY+TL+I Q+VIF NTRRKVDWLT+ M RD TVSA HGDMDQ R++
Sbjct: 260 EKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDI 319
Query: 537 IMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXI 358
IMR+FR+GSSRVLITTDLLARGIDVQQVS VIN+DLP+ ENY I
Sbjct: 320 IMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAI 379
Query: 357 NFVTEADRRALKDIEDFYHTSIVEMPSDVANLI 259
NFVT D+R L DI+ FY+ + E+PS+VA+L+
Sbjct: 380 NFVTLDDQRMLFDIQKFYNVVVEELPSNVADLL 412
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 199 bits (485), Expect = 2e-51
Identities = 95/151 (62%), Positives = 114/151 (75%)
Frame = -2
Query: 711 EEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIM 532
EEWKLETLCDLY+TL+I Q+VIF NTRRKVDWLT+ M RD TVSA HGDMDQ R++IM
Sbjct: 264 EEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIM 323
Query: 531 RQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXINF 352
R+FR+GSSRVLITTDLLARGIDVQQVS VIN+DLP+ ENY INF
Sbjct: 324 REFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINF 383
Query: 351 VTEADRRALKDIEDFYHTSIVEMPSDVANLI 259
+T D R + DI+ FY+ + E+PS+VA+L+
Sbjct: 384 MTSEDERMMADIQRFYNVVVEELPSNVADLL 414
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 195 bits (475), Expect = 3e-50
Identities = 95/153 (62%), Positives = 113/153 (73%)
Frame = -2
Query: 717 ELEEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREV 538
E EEWK +TLCDLYDTL+I QAVIFCNT+RKVD+L+E M +FTVS+MHGDM Q+ER+
Sbjct: 256 EKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDYLSEKMRSHNFTVSSMHGDMPQKERDA 315
Query: 537 IMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXI 358
IM +FR+G SRVLITTD+ ARGIDVQQVS VINYDLP+NRE Y I
Sbjct: 316 IMNEFRSGDSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAI 375
Query: 357 NFVTEADRRALKDIEDFYHTSIVEMPSDVANLI 259
NFV D + L+DIE +Y T I EMP +VA+LI
Sbjct: 376 NFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI 408
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 169 bits (410), Expect = 2e-42
Identities = 84/147 (57%), Positives = 101/147 (68%)
Frame = -2
Query: 711 EEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIM 532
EEWK +TLCDLY L+I QA+IFCNTR+KVDWLTE M +F VS+MHGD Q+ER+ IM
Sbjct: 245 EEWKFDTLCDLYGRLTINQAIIFCNTRQKVDWLTEKMRSSNFIVSSMHGDKRQKERDDIM 304
Query: 531 RQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXINF 352
QFR+ SRVLI +D+ ARGIDVQ VS VINYD+P+N E Y INF
Sbjct: 305 NQFRSFKSRVLIASDVWARGIDVQTVSHVINYDIPNNPELYIHRIGRAGRFGREGVAINF 364
Query: 351 VTEADRRALKDIEDFYHTSIVEMPSDV 271
V +D + LKDIE Y T I EMP+D+
Sbjct: 365 VKSSDMKDLKDIERHYGTKIREMPADL 391
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 90.2 bits (214), Expect = 1e-18
Identities = 50/151 (33%), Positives = 73/151 (48%)
Frame = -2
Query: 711 EEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIM 532
E K+ L L+ L I Q++IFCN+ +V+ L + + ++ +H M Q R +
Sbjct: 352 ERQKIHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVF 411
Query: 531 RQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXINF 352
FR G+ R L+ TDL RGID+Q V+ VIN+D P N E Y +N
Sbjct: 412 HDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNL 471
Query: 351 VTEADRRALKDIEDFYHTSIVEMPSDVANLI 259
+T DR L IE T I ++P + I
Sbjct: 472 ITYEDRFNLYRIEQELGTEIKQIPPHIDQAI 502
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 90.2 bits (214), Expect = 1e-18
Identities = 50/151 (33%), Positives = 73/151 (48%)
Frame = -2
Query: 711 EEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIM 532
E K+ L L+ L I Q++IFCN+ +V+ L + + ++ +H M Q R +
Sbjct: 352 ERQKIHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVF 411
Query: 531 RQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXINF 352
FR G+ R L+ TDL RGID+Q V+ VIN+D P N E Y +N
Sbjct: 412 HDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFGHLGLAVNL 471
Query: 351 VTEADRRALKDIEDFYHTSIVEMPSDVANLI 259
+T DR L IE T I ++P + I
Sbjct: 472 ITYEDRFNLYRIEQELGTEIKQIPPHIDQAI 502
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 89.0 bits (211), Expect = 3e-18
Identities = 49/151 (32%), Positives = 74/151 (49%)
Frame = -2
Query: 711 EEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIM 532
E K+ L L+ L I Q++IFCN+ +V+ L + + ++ +H M Q R +
Sbjct: 345 ERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVF 404
Query: 531 RQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXINF 352
+FR G+ R L+ TDL RGID+Q V+ VIN+D P E+Y +N
Sbjct: 405 HEFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNL 464
Query: 351 VTEADRRALKDIEDFYHTSIVEMPSDVANLI 259
VT DR + E T I +PS++ I
Sbjct: 465 VTYEDRFKMYQTEQELGTEIKPIPSNIDQAI 495
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 89.0 bits (211), Expect = 3e-18
Identities = 49/151 (32%), Positives = 74/151 (49%)
Frame = -2
Query: 711 EEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIM 532
E K+ L L+ L I Q++IFCN+ +V+ L + + ++ +H M Q R +
Sbjct: 345 ERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVF 404
Query: 531 RQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXINF 352
+FR G+ R L+ TDL RGID+Q V+ VIN+D P E+Y +N
Sbjct: 405 HEFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNL 464
Query: 351 VTEADRRALKDIEDFYHTSIVEMPSDVANLI 259
VT DR + E T I +PS++ I
Sbjct: 465 VTYEDRFKMYQTEQELGTEIKPIPSNIDQAI 495
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 87.4 bits (207), Expect = 8e-18
Identities = 37/84 (44%), Positives = 59/84 (70%)
Frame = -2
Query: 660 AQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLL 481
++ +IFC+T+R D LT ++ R F +A+HGD Q ER+ ++ QFR+G + VL+ TD+
Sbjct: 404 SKVIIFCSTKRMCDQLTRNL-TRQFGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVA 462
Query: 480 ARGIDVQQVSCVINYDLPSNRENY 409
ARG+DV+ + V+NYD P+ E+Y
Sbjct: 463 ARGLDVKDIRAVVNYDFPNGVEDY 486
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 87.4 bits (207), Expect = 8e-18
Identities = 37/84 (44%), Positives = 59/84 (70%)
Frame = -2
Query: 660 AQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLL 481
++ +IFC+T+R D LT ++ R F +A+HGD Q ER+ ++ QFR+G + VL+ TD+
Sbjct: 404 SKVIIFCSTKRMCDQLTRNL-TRQFGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVA 462
Query: 480 ARGIDVQQVSCVINYDLPSNRENY 409
ARG+DV+ + V+NYD P+ E+Y
Sbjct: 463 ARGLDVKDIRAVVNYDFPNGVEDY 486
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 87.4 bits (207), Expect = 8e-18
Identities = 37/84 (44%), Positives = 59/84 (70%)
Frame = -2
Query: 660 AQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLL 481
++ +IFC+T+R D LT ++ R F +A+HGD Q ER+ ++ QFR+G + VL+ TD+
Sbjct: 404 SKVIIFCSTKRMCDQLTRNL-TRQFGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVA 462
Query: 480 ARGIDVQQVSCVINYDLPSNRENY 409
ARG+DV+ + V+NYD P+ E+Y
Sbjct: 463 ARGLDVKDIRAVVNYDFPNGVEDY 486
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 86.6 bits (205), Expect = 1e-17
Identities = 45/133 (33%), Positives = 70/133 (52%)
Frame = -2
Query: 660 AQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLL 481
++ +IFC+T+R D L S+ R F +HGD Q ER+ ++ QFR+G S VLI TD+
Sbjct: 681 SKVIIFCSTKRLCDHLARSVG-RHFGAVVIHGDKTQGERDWVLNQFRSGKSCVLIATDVA 739
Query: 480 ARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXINFVTEADRRALKDIEDFYH 301
ARG+D++ + VINYD P+ E+Y F TE D + D+
Sbjct: 740 ARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAFTFFTEQDWKYAPDLIKVLE 799
Query: 300 TSIVEMPSDVANL 262
+ ++P V ++
Sbjct: 800 GANQQVPPQVRDI 812
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 86.2 bits (204), Expect = 2e-17
Identities = 48/145 (33%), Positives = 70/145 (48%)
Frame = -2
Query: 711 EEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIM 532
E K+ L L+ L I Q++IFCN+ +V+ L + + ++ +H M Q R +
Sbjct: 375 ERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVF 434
Query: 531 RQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXINF 352
FR G+ R L+ TDL RGID+Q V+ VIN+D P E+Y +N
Sbjct: 435 HDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNL 494
Query: 351 VTEADRRALKDIEDFYHTSIVEMPS 277
VT DR + E T I +PS
Sbjct: 495 VTYEDRFKMYQTEQELGTEIKPIPS 519
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 85.0 bits (201), Expect = 4e-17
Identities = 41/133 (30%), Positives = 70/133 (52%)
Frame = -2
Query: 660 AQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLL 481
++ +IFC+T+R D L ++ R F +A+HGD Q ER+ ++ QFR+G + VL+ TD+
Sbjct: 475 SKIIIFCSTKRMCDQLARNL-TRTFGAAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVA 533
Query: 480 ARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXINFVTEADRRALKDIEDFYH 301
ARG+DV+ + V+NYD P+ E+Y F + D + D+
Sbjct: 534 ARGLDVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHASDLIKILE 593
Query: 300 TSIVEMPSDVANL 262
+ ++P V +
Sbjct: 594 GANQKVPPQVREM 606
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 82.2 bits (194), Expect = 3e-16
Identities = 45/145 (31%), Positives = 69/145 (47%), Gaps = 1/145 (0%)
Frame = -2
Query: 702 KLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQF 523
K L DL D L Q VIF + + L + + +F +H M Q ER + F
Sbjct: 192 KTRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSF 251
Query: 522 RTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXINFVTE 343
+ G R+L+ TDL+ RGID+++V+ VINYD+P + + Y I FV
Sbjct: 252 KEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVAS 311
Query: 342 A-DRRALKDIEDFYHTSIVEMPSDV 271
A D L +++ + I E+P +
Sbjct: 312 ASDSEVLNQVQERFEVDIKELPEQI 336
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 82.2 bits (194), Expect = 3e-16
Identities = 45/145 (31%), Positives = 69/145 (47%), Gaps = 1/145 (0%)
Frame = -2
Query: 702 KLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQF 523
K L DL D L Q VIF + + L + + +F +H M Q ER + F
Sbjct: 275 KTRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSF 334
Query: 522 RTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXINFVTE 343
+ G R+L+ TDL+ RGID+++V+ VINYD+P + + Y I FV
Sbjct: 335 KEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVAS 394
Query: 342 A-DRRALKDIEDFYHTSIVEMPSDV 271
A D L +++ + I E+P +
Sbjct: 395 ASDSEVLNQVQERFEVDIKELPEQI 419
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 81.4 bits (192), Expect = 5e-16
Identities = 45/145 (31%), Positives = 69/145 (47%), Gaps = 1/145 (0%)
Frame = -2
Query: 702 KLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQF 523
K L DL D L Q VIF + + L + + +F +H M Q ER + F
Sbjct: 275 KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSF 334
Query: 522 RTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXINFVTE 343
+ G R+L+ TDL+ RGID+++V+ VINYD+P + + Y I FV
Sbjct: 335 KEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVAS 394
Query: 342 A-DRRALKDIEDFYHTSIVEMPSDV 271
A D L +++ + I E+P +
Sbjct: 395 ASDSEVLNQVQERFEVDIKELPEQI 419
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 81.4 bits (192), Expect = 5e-16
Identities = 38/140 (27%), Positives = 75/140 (53%)
Frame = -2
Query: 681 LYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRV 502
L D + ++ ++F +T++ D +T + + + ++HGD Q ER+ ++ +FR+G S +
Sbjct: 338 LEDIMDGSRILVFLDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPI 397
Query: 501 LITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXINFVTEADRRALK 322
+ TD+ ARG+DV+ V VINYD P + E+Y F T A+ R K
Sbjct: 398 MTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTVANARFAK 457
Query: 321 DIEDFYHTSIVEMPSDVANL 262
++ + + ++ ++A++
Sbjct: 458 ELTNILQEAGQKVSPELASM 477
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 81.0 bits (191), Expect = 7e-16
Identities = 43/148 (29%), Positives = 71/148 (47%)
Frame = -2
Query: 711 EEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIM 532
E K L L D L A++F NT++ D + +++ + V+ +HG Q +RE+ +
Sbjct: 560 ESEKFFRLQKLLDELGEKTAIVFVNTKKNCDSIAKNLDKAGYRVTTLHGGKSQEQREISL 619
Query: 531 RQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXINF 352
FR VL+ TD++ RGID+ V+ VINYD+P + E Y +F
Sbjct: 620 EGFRAKRYNVLVATDVVGRGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRAGKSGVATSF 679
Query: 351 VTEADRRALKDIEDFYHTSIVEMPSDVA 268
+T D D++ S +P ++A
Sbjct: 680 LTLHDTEVFYDLKQMLVQSNSAVPPELA 707
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 80.6 bits (190), Expect = 1e-15
Identities = 32/81 (39%), Positives = 57/81 (70%)
Frame = -2
Query: 651 VIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARG 472
++F T+R D L + + +F +++HGD Q+EREV +R F+TG + +L+ TD+ ARG
Sbjct: 412 LVFVETKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRSFKTGRTPILVATDVAARG 471
Query: 471 IDVQQVSCVINYDLPSNRENY 409
+D+ V+ V+N+DLP++ ++Y
Sbjct: 472 LDIPHVAHVVNFDLPNDIDDY 492
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 80.6 bits (190), Expect = 1e-15
Identities = 32/81 (39%), Positives = 57/81 (70%)
Frame = -2
Query: 651 VIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARG 472
++F T+R D L + + +F +++HGD Q+EREV +R F+TG + +L+ TD+ ARG
Sbjct: 412 LVFVETKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRSFKTGRTPILVATDVAARG 471
Query: 471 IDVQQVSCVINYDLPSNRENY 409
+D+ V+ V+N+DLP++ ++Y
Sbjct: 472 LDIPHVAHVVNFDLPNDIDDY 492
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 79.4 bits (187), Expect = 2e-15
Identities = 31/84 (36%), Positives = 55/84 (65%)
Frame = -2
Query: 660 AQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLL 481
++ +IF T+R D +T + + + A+HGD Q ER+ ++ +F++G S ++ TD+
Sbjct: 411 SKILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIMTATDVA 470
Query: 480 ARGIDVQQVSCVINYDLPSNRENY 409
ARG+DV+ + CV+NYD P+ E+Y
Sbjct: 471 ARGLDVKDIKCVVNYDFPNTLEDY 494
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 78.6 bits (185), Expect = 4e-15
Identities = 32/84 (38%), Positives = 56/84 (66%)
Frame = -2
Query: 660 AQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLL 481
A ++F T++ D L + + F + +HGD Q+EREV +R F+TG + +L+ TD+
Sbjct: 406 ALTLVFVETKKGADSLENWLCINGFPATTIHGDRSQQEREVALRSFKTGRTPILVATDVA 465
Query: 480 ARGIDVQQVSCVINYDLPSNRENY 409
ARG+D+ V+ V+N+DLP++ ++Y
Sbjct: 466 ARGLDIPHVAHVVNFDLPNDIDDY 489
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 77.4 bits (182), Expect = 9e-15
Identities = 41/127 (32%), Positives = 66/127 (51%)
Frame = -2
Query: 657 QAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLA 478
+ ++F T+R D L+ ++ R F A+HGD+ Q +RE + FR G +L+ TD+ A
Sbjct: 351 KCIVFTQTKRDADRLSYAL-ARSFKCEALHGDISQSQRERTLAGFRDGHFNILVATDVAA 409
Query: 477 RGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXINFVTEADRRALKDIEDFYHT 298
RG+DV V +I+Y+LP+N E + I ++ RA+K IE +
Sbjct: 410 RGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQSRAVKIIEREVGS 469
Query: 297 SIVEMPS 277
E+PS
Sbjct: 470 RFTELPS 476
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 77.0 bits (181), Expect = 1e-14
Identities = 46/150 (30%), Positives = 71/150 (47%)
Frame = -2
Query: 711 EEWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIM 532
EE KL L + +IF ++ + L + + + +H D+ ERE +
Sbjct: 364 EEGKLLALRQSFAESLNPPVLIFVQSKERAKELYDELKCENIRAGVIHSDLPPGERENAV 423
Query: 531 RQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXINF 352
QFR G VLI TD++ARG+D + ++CVINYD P + Y I F
Sbjct: 424 DQFRAGEKWVLIATDVIARGMDFKGINCVINYDFPDSASAYIHRIGRSGRAGRSGEAITF 483
Query: 351 VTEADRRALKDIEDFYHTSIVEMPSDVANL 262
TE D L++I + +S E+PS + +L
Sbjct: 484 YTEQDVPFLRNIANTMMSSGCEVPSWIMSL 513
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 76.6 bits (180), Expect = 2e-14
Identities = 31/84 (36%), Positives = 57/84 (67%)
Frame = -2
Query: 660 AQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLL 481
A ++F T+R D L + + F +++HGD Q+EREV ++ F++G + +L+ TD+
Sbjct: 419 ALTLVFVETKRGADSLENWLCINGFPATSIHGDRTQQEREVALKAFKSGRTPILVATDVA 478
Query: 480 ARGIDVQQVSCVINYDLPSNRENY 409
ARG+D+ V+ V+N+DLP++ ++Y
Sbjct: 479 ARGLDIPHVAHVVNFDLPNDIDDY 502
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 72.1 bits (169), Expect = 3e-13
Identities = 33/97 (34%), Positives = 56/97 (57%)
Frame = -2
Query: 705 WKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQ 526
W LE L + D ++F + + VD + + L F V+A+HGD DQ R +++
Sbjct: 462 WLLEKLPGMIDE---GDVLVFASKKATVDEIEAQLTLNSFKVAALHGDKDQASRMETLQK 518
Query: 525 FRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRE 415
F++G VLI TD+ ARG+D++ + V+NYD+ + +
Sbjct: 519 FKSGVHHVLIATDVAARGLDIKSLKTVVNYDIAKDMD 555
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 71.7 bits (168), Expect = 4e-13
Identities = 31/81 (38%), Positives = 48/81 (59%)
Frame = -2
Query: 651 VIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARG 472
+IFC + VD + E + L+ A+HG DQ +RE + F+ G VL+ TD+ ++G
Sbjct: 401 LIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDREYAISSFKAGKKDVLVATDVASKG 460
Query: 471 IDVQQVSCVINYDLPSNRENY 409
+D + VINYD+P+ ENY
Sbjct: 461 LDFPDIQHVINYDMPAEIENY 481
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 71.7 bits (168), Expect = 4e-13
Identities = 40/127 (31%), Positives = 64/127 (50%)
Frame = -2
Query: 657 QAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLA 478
+ ++F T+R D L + + + A+HGD+ Q +RE + FR G+ +L+ TD+ A
Sbjct: 363 KCIVFTQTKRDADRLAFGL-AKSYKCEALHGDISQAQRERTLAGFRDGNFSILVATDVAA 421
Query: 477 RGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXINFVTEADRRALKDIEDFYHT 298
RG+DV V VI+Y+LP+N E + I + RA+K IE +
Sbjct: 422 RGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILIHGQDQTRAVKMIEKEVGS 481
Query: 297 SIVEMPS 277
E+PS
Sbjct: 482 RFNELPS 488
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 70.1 bits (164), Expect = 1e-12
Identities = 32/100 (32%), Positives = 65/100 (65%), Gaps = 1/100 (1%)
Frame = -2
Query: 711 EEWKLETLCD-LYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVI 535
E+ K+E + D + + I Q +IF T+ + +++ + V+++HG++ + +R+ I
Sbjct: 323 EQNKIEVIKDQIMELGDIGQTIIFVKTKASAQKVHKALAEMGYDVTSVHGNLTESDRDKI 382
Query: 534 MRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRE 415
+++F+ ++VLI TD++ARG D Q+V+ V+NY+LP+ E
Sbjct: 383 VKEFKECLTQVLIATDVIARGFDQQRVNLVVNYNLPTKYE 422
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 69.3 bits (162), Expect = 2e-12
Identities = 30/81 (37%), Positives = 47/81 (58%)
Frame = -2
Query: 651 VIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARG 472
+IFC + VD + E + L+ A+HG DQ +R+ + F+ G VL+ TD+ ++G
Sbjct: 352 LIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRDYAISLFKAGKKDVLVATDVASKG 411
Query: 471 IDVQQVSCVINYDLPSNRENY 409
+D + VINYD+P ENY
Sbjct: 412 LDFPDIQHVINYDMPGEIENY 432
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 67.7 bits (158), Expect = 7e-12
Identities = 36/128 (28%), Positives = 62/128 (48%)
Frame = -2
Query: 657 QAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLA 478
Q +IF +T+ V+++ L + S +GDMDQ R++ + +FR + +LI TD+ A
Sbjct: 273 QTLIFVSTKHHVEFVNSLFKLENIEPSVCYGDMDQDARKIHVSRFRARKTMLLIVTDIAA 332
Query: 477 RGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXINFVTEADRRALKDIEDFYHT 298
RGID+ + VIN+D P + + +FVT D + D+ F
Sbjct: 333 RGIDIPLLDNVINWDFPPRPKIFVHRVGRAARAGRTGCAYSFVTPEDMPYMLDLHLFLSK 392
Query: 297 SIVEMPSD 274
+ P++
Sbjct: 393 PVRPAPTE 400
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 66.9 bits (156), Expect = 1e-11
Identities = 35/133 (26%), Positives = 63/133 (47%)
Frame = -2
Query: 651 VIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARG 472
++F ++ K D L M + ++HG DQ +RE + F+ +LI T + ARG
Sbjct: 780 LVFVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFKNDVCNLLIATSVAARG 839
Query: 471 IDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXINFVTEADRRALKDIEDFYHTSI 292
+DV+++ V+N+D P++ E+Y + F++E D + D+ S
Sbjct: 840 LDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISEDDAKYAPDLVKALELSE 899
Query: 291 VEMPSDVANLI*G 253
+P D+ L G
Sbjct: 900 QPVPDDLKALADG 912
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 66.1 bits (154), Expect = 2e-11
Identities = 28/83 (33%), Positives = 50/83 (60%)
Frame = -2
Query: 657 QAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLA 478
+ ++F T+R D ++ ++ A+HGD+ Q +RE + FR G VL+ TD+ +
Sbjct: 353 KTIVFTQTKRDADEVSLALS-NSIATEALHGDISQHQRERTLNAFRQGKFTVLVATDVAS 411
Query: 477 RGIDVQQVSCVINYDLPSNRENY 409
RG+D+ V VI+Y+LP++ E +
Sbjct: 412 RGLDIPNVDLVIHYELPNDPETF 434
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 65.7 bits (153), Expect = 3e-11
Identities = 29/98 (29%), Positives = 54/98 (55%)
Frame = -2
Query: 702 KLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQF 523
K++TL L + F N R++ + + R + MHGD+ + R ++++F
Sbjct: 394 KVDTLRRCVHALDAQSVIAFMNHSRQLKDVVYKLEARGMNSAEMHGDLGKLGRSTVLKKF 453
Query: 522 RTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 409
+ G +VL+T +L ARG+DV + V+N +LP++ +Y
Sbjct: 454 KNGEIKVLVTNELSARGLDVAECDLVVNLELPTDAVHY 491
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 61.3 bits (142), Expect = 6e-10
Identities = 29/81 (35%), Positives = 42/81 (51%)
Frame = -2
Query: 651 VIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARG 472
++F +T + V + TE M + D VS +HG MDQ R F +L+ TD+ ARG
Sbjct: 338 MVFFSTCKSVQFHTEIMKISDVDVSDIHGGMDQNRRTKTFFDFMKAKKGILLCTDVAARG 397
Query: 471 IDVQQVSCVINYDLPSNRENY 409
+D+ V +I YD P Y
Sbjct: 398 LDIPSVDWIIQYDPPDKPTEY 418
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 58.4 bits (135), Expect = 4e-09
Identities = 33/118 (27%), Positives = 57/118 (48%)
Frame = -2
Query: 663 IAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDL 484
I A+IF +T R L+ + + AMH Q R + +F++G +L+ TD+
Sbjct: 302 IRSAMIFVSTCRTCQRLSLMLDELEVENIAMHSLNSQSMRLSALSKFKSGKVPILLATDV 361
Query: 483 LARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXINFVTEADRRALKDIED 310
+RG+D+ V VINYD+P + +Y ++ +TE D + + IE+
Sbjct: 362 ASRGLDIPTVDLVINYDIPRDPRDYVHRVGRTARAGRGGLAVSIITETDVKLIHKIEE 419
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 58.0 bits (134), Expect = 6e-09
Identities = 30/94 (31%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Frame = -2
Query: 681 LYDTLSI---AQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGS 511
LY LS+ + ++FC + + ++ + + V + +M QR R + +FR
Sbjct: 493 LYYILSVHGQGRTIVFCTSVTDLRHISGLLKILGLDVCTLFSEMKQRARLKSIDRFRASE 552
Query: 510 SRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 409
+ +LI TDL+ARGID++ V +I+Y LP + E Y
Sbjct: 553 NGILIATDLVARGIDIKNVRTIIHYKLPHSAEVY 586
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 58.0 bits (134), Expect = 6e-09
Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 1/132 (0%)
Frame = -2
Query: 654 AVIFCNTRRKVDWLTESMHL-RDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLA 478
AV++ ++R D L ++ + ++HG+ +ER +M F G VL++T +L
Sbjct: 360 AVVYVSSRVGADLLANAITVVTGVKALSIHGEKPMKERRDVMGSFLGGEVPVLVSTGVLG 419
Query: 477 RGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXINFVTEADRRALKDIEDFYHT 298
RG+D+ V VI +D+PS + Y I FV E DR D+ +
Sbjct: 420 RGVDLLVVRQVIVFDMPSTIKEYIHVIGRASRMGEKGTAIVFVNEDDRNLFPDLVAALKS 479
Query: 297 SIVEMPSDVANL 262
S +P ++ NL
Sbjct: 480 SGAAIPKELINL 491
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 58.0 bits (134), Expect = 6e-09
Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 1/132 (0%)
Frame = -2
Query: 654 AVIFCNTRRKVDWLTESMHL-RDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLA 478
AV++ ++R D L ++ + ++HG+ +ER +M F G VL++T +L
Sbjct: 223 AVVYVSSRVGADLLANAITVVTGVKALSIHGEKPMKERRDVMGSFLGGEVPVLVSTGVLG 282
Query: 477 RGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXINFVTEADRRALKDIEDFYHT 298
RG+D+ V VI +D+PS + Y I FV E DR D+ +
Sbjct: 283 RGVDLLVVRQVIVFDMPSTIKEYIHVIGRASRMGEKGTAIVFVNEDDRNLFPDLVAALKS 342
Query: 297 SIVEMPSDVANL 262
S +P ++ NL
Sbjct: 343 SGAAIPKELINL 354
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 57.2 bits (132), Expect = 1e-08
Identities = 34/115 (29%), Positives = 53/115 (46%)
Frame = -2
Query: 660 AQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLL 481
++ +IF T++ L L + +HG++ Q +R + FR LI TD+
Sbjct: 413 SKVIIFSGTKQAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFRKQEVDFLIATDVA 472
Query: 480 ARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXINFVTEADRRALKDI 316
ARG+D+ V VINY P ++Y + FVT++DR LK I
Sbjct: 473 ARGLDIIGVQTVINYACPREIDSYVHRVGRTARAGREGYAVTFVTDSDRSLLKVI 527
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 56.8 bits (131), Expect = 1e-08
Identities = 26/82 (31%), Positives = 45/82 (54%)
Frame = -2
Query: 654 AVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLAR 475
++IF T +L + F + G M Q +R + +F+ G +L+ TD+ +R
Sbjct: 263 SMIFTRTCDGTRFLALVLRSLGFRAIPISGQMTQSKRLGALNKFKAGECNILVCTDVASR 322
Query: 474 GIDVQQVSCVINYDLPSNRENY 409
G+D+ V VINYD+P+N ++Y
Sbjct: 323 GLDIPSVDVVINYDIPTNSKDY 344
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 56.8 bits (131), Expect = 1e-08
Identities = 29/98 (29%), Positives = 50/98 (51%)
Frame = -2
Query: 702 KLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQF 523
+L L + Y + ++F + + + L + R + ++HG+ Q ER + F
Sbjct: 353 RLIALLEKYHKSQKNRVLVFALYKVEAERLERFLQQRGWKAVSIHGNKAQSERTRSLSLF 412
Query: 522 RTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 409
+ GS +L+ TD+ ARG+D+ V VINY P E+Y
Sbjct: 413 KEGSCPLLVATDVAARGLDIPDVEVVINYTFPLTTEDY 450
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 55.6 bits (128), Expect = 3e-08
Identities = 27/83 (32%), Positives = 42/83 (50%)
Frame = -2
Query: 657 QAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLA 478
+ +IFC T + + + V +H Q R + +FR S +L+T+D+ A
Sbjct: 340 KVIIFCTTAMVTRLVADLLGKLSLNVREIHSRKPQSYRTRVSDEFRKSKSIILVTSDVSA 399
Query: 477 RGIDVQQVSCVINYDLPSNRENY 409
RG+D VS V+ LPS+RE Y
Sbjct: 400 RGVDYPDVSLVVQMGLPSDREQY 422
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 54.8 bits (126), Expect = 5e-08
Identities = 26/83 (31%), Positives = 42/83 (50%)
Frame = -2
Query: 657 QAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLA 478
+ +IFC T + + + V +H Q R + +FR + +L+T+D+ A
Sbjct: 642 KVIIFCTTAMVTRLVADLLSQLSLNVREIHSRKPQSYRTRVSDEFRKSKAIILVTSDVSA 701
Query: 477 RGIDVQQVSCVINYDLPSNRENY 409
RG+D VS V+ LPS+RE Y
Sbjct: 702 RGVDYPDVSLVVQMGLPSDREQY 724
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 54.8 bits (126), Expect = 5e-08
Identities = 22/55 (40%), Positives = 32/55 (58%)
Frame = -2
Query: 573 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 409
+HG M+Q +R F+T VL++TD+ ARG+D +V C+I YD P Y
Sbjct: 379 LHGSMEQEDRRSAFGTFKTEKQAVLLSTDVAARGLDFPKVRCIIQYDCPGEATEY 433
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 54.4 bits (125), Expect = 7e-08
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 4/98 (4%)
Frame = -2
Query: 702 KLETLCDLYDTLSIAQAVIFCNTRRKVDW----LTESMHLRDFTVSAMHGDMDQREREVI 535
K L DL S + ++F T VD+ L++ L+ ++ +HGDM Q R+
Sbjct: 261 KSSQLVDLLIKNSDKKLIVFFMTCASVDYWGLVLSKIPALKSISLIPIHGDMKQNARDKA 320
Query: 534 MRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSN 421
+ F SS L+ TD+ ARG+D+ + V+ YD P +
Sbjct: 321 LASFTKASSGALLCTDVAARGLDIPGIDYVVQYDPPQD 358
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 52.8 bits (121), Expect = 2e-07
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Frame = -2
Query: 651 VIFCNTRRKVDW----LTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDL 484
V+F T VD+ L++ L+ + + HG MDQ+ R+ + F SS VL+ TD+
Sbjct: 269 VVFFMTCACVDYWGLVLSKIPTLKSISFFSTHGKMDQKGRDTALASFTEASSGVLLCTDV 328
Query: 483 LARGIDVQQVSCVINYDLPSN 421
ARG+D+ + V+ YD P +
Sbjct: 329 AARGLDIPGIDYVVQYDPPQD 349
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 52.4 bits (120), Expect = 3e-07
Identities = 29/83 (34%), Positives = 46/83 (55%)
Frame = -2
Query: 657 QAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLA 478
Q +IF T+ +V +E L D + A+HG++ Q +REV + FR G L+ T++ A
Sbjct: 352 QTIIFAETKVQV---SELSGLLDGS-RALHGEIPQSQREVTLAGFRNGKFATLVATNVAA 407
Query: 477 RGIDVQQVSCVINYDLPSNRENY 409
RG+D+ V +I + P E Y
Sbjct: 408 RGLDINDVQLIIQCEPPREVEAY 430
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 52.0 bits (119), Expect = 4e-07
Identities = 23/83 (27%), Positives = 41/83 (49%)
Frame = -2
Query: 657 QAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLA 478
+ ++FC T + + + + V +H Q R + +FR +L+T+D+ A
Sbjct: 314 KVIVFCTTAMVTKLVADLLGELNLNVREIHSRKPQSYRTRVSNEFRKSKGLILVTSDVSA 373
Query: 477 RGIDVQQVSCVINYDLPSNRENY 409
RG+D V+ V+ LP +RE Y
Sbjct: 374 RGVDYPDVTLVLQVGLPKDREQY 396
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 52.0 bits (119), Expect = 4e-07
Identities = 21/64 (32%), Positives = 40/64 (62%)
Frame = -2
Query: 660 AQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLL 481
++ +IF T+R D +T + + + A+HGD Q ER+ ++ +F++G S ++ TD+
Sbjct: 411 SKILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIMTATDVA 470
Query: 480 ARGI 469
ARG+
Sbjct: 471 ARGL 474
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 50.4 bits (115), Expect = 1e-06
Identities = 35/136 (25%), Positives = 69/136 (50%), Gaps = 3/136 (2%)
Frame = -2
Query: 708 EWKLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMH-LRD-FTVSAMHGDMDQREREVI 535
E KL+ L T ++ ++F +T+++V ++ E+ + LR + ++HG M Q +R +
Sbjct: 301 EKKLDMLWSFIKTHLNSRILVFLSTKKQVKFVHEAFNKLRPGIPLKSLHGKMSQEKRMGV 360
Query: 534 MRQFRTGSSRVLITTDLLARGIDVQQ-VSCVINYDLPSNRENYXXXXXXXXXXXXXXXXI 358
QF S VL TD+LARG+D + V V+ D P + +Y +
Sbjct: 361 YSQFIERQS-VLFCTDVLARGLDFDKAVDWVVQVDCPEDVASYIHRVGRTARFYTQGKSL 419
Query: 357 NFVTEADRRALKDIED 310
F+T ++ + ++ +++
Sbjct: 420 LFLTPSEEKMIEKLQE 435
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 49.6 bits (113), Expect = 2e-06
Identities = 25/94 (26%), Positives = 46/94 (48%)
Frame = -2
Query: 552 REREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXX 373
R +E + F++ +LI T + ARG+DV+++ V+N+D P++ E+Y
Sbjct: 651 RSQEKSISDFKSDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGR 710
Query: 372 XXXXINFVTEADRRALKDIEDFYHTSIVEMPSDV 271
+ F++E D + D+ S +P DV
Sbjct: 711 KGCAVTFISEDDAKYAPDLVKALELSEQPVPDDV 744
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 48.8 bits (111), Expect = 4e-06
Identities = 22/81 (27%), Positives = 41/81 (50%)
Frame = -2
Query: 651 VIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARG 472
++FC+T + + V +H Q R + +F+ + +L+T+D+ ARG
Sbjct: 638 IVFCSTGMVTSLMYTLLREMKLNVREIHARKPQLHRTCVSDEFKESNRLILVTSDVSARG 697
Query: 471 IDVQQVSCVINYDLPSNRENY 409
++ V+ VI +PS+RE Y
Sbjct: 698 MNYPDVTLVIQVGIPSDREQY 718
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 48.0 bits (109), Expect = 6e-06
Identities = 22/81 (27%), Positives = 41/81 (50%)
Frame = -2
Query: 651 VIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARG 472
++FC+T + + V +H Q R + +F+ + +L+T+D+ ARG
Sbjct: 591 IVFCSTGMVTSLMYTLLREMKLNVREIHARKPQLHRTRVSDEFKESNRLILVTSDVSARG 650
Query: 471 IDVQQVSCVINYDLPSNRENY 409
++ V+ VI +PS+RE Y
Sbjct: 651 MNYPDVTLVIQVGIPSDREQY 671
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 47.6 bits (108), Expect = 8e-06
Identities = 19/55 (34%), Positives = 33/55 (60%)
Frame = -2
Query: 573 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 409
+ GDM+ R + + R G +L++TD+ ARGID+ + + + N+DLP +Y
Sbjct: 371 LEGDMNFNSRAASLTEIRQGGGFLLVSTDIAARGIDLPETTHIFNFDLPQTVTDY 425
>At5g19210.1 68418.m02288 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 315
Score = 47.6 bits (108), Expect = 8e-06
Identities = 19/55 (34%), Positives = 33/55 (60%)
Frame = -2
Query: 573 MHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 409
+ GDM+ R + + R G +L++TD+ ARGID+ + + + N+DLP +Y
Sbjct: 214 LEGDMNFNSRAASLTEIRQGGGFLLVSTDIAARGIDLPETTHIFNFDLPQTVTDY 268
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 47.2 bits (107), Expect = 1e-05
Identities = 21/47 (44%), Positives = 32/47 (68%)
Frame = -2
Query: 567 GDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLP 427
G ++Q R ++ FR G +VL+ +D L RG+DV+ V+ VINYD+P
Sbjct: 360 GGLNQSLRSKELKAFRKGDIQVLVASDALTRGMDVKGVTNVINYDMP 406
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 46.0 bits (104), Expect = 3e-05
Identities = 22/81 (27%), Positives = 39/81 (48%)
Frame = -2
Query: 651 VIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARG 472
++F +T + + E F + G +DQ +R QF + +L+ T++ ARG
Sbjct: 404 MVFFSTCKSTKFHAELFRYIKFDCLEIRGGIDQNKRTPTFLQFIKAETGILLCTNVAARG 463
Query: 471 IDVQQVSCVINYDLPSNRENY 409
+D V ++ YD P N +Y
Sbjct: 464 LDFPHVDWIVQYDPPDNPTDY 484
>At1g60930.1 68414.m06858 DNA helicase, putative strong similarity
to DNA Helicase recQl4B [Arabidopsis thaliana]
GI:11121451; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00570: HRDC domain
Length = 1024
Score = 45.2 bits (102), Expect = 4e-05
Identities = 21/81 (25%), Positives = 40/81 (49%)
Frame = -2
Query: 651 VIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARG 472
+I+C +R + +TE++ + + HG MD +R + +Q+ ++ T G
Sbjct: 630 IIYCLSRMDCEKVTEALRVFGHKAAFYHGSMDPGKRAFVQKQWSKDEINIICATVAFGMG 689
Query: 471 IDVQQVSCVINYDLPSNRENY 409
I+ V VI++ LP + E Y
Sbjct: 690 INKPDVRFVIHHSLPKSIEGY 710
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 44.0 bits (99), Expect = 1e-04
Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Frame = -2
Query: 708 EWKLETLCDLYDTLSIAQA---VIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREV 538
E KLE L + + S+A+ ++FCNT + + + HG++ +R
Sbjct: 353 EDKLEALLQVLEP-SLAKGSKVMVFCNTLNSSRAVDHYLSENQISTVNYHGEVPAEQRVE 411
Query: 537 IMRQFRT--GSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 409
+++F+ G L+ TDL ARG+D+ V V+ +D P N +Y
Sbjct: 412 NLKKFKDEEGDCPTLVCTDLAARGLDL-DVDHVVMFDFPKNSIDY 455
>At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative
similar to SP|O94761 ATP-dependent DNA helicase Q4
(RecQ4) {Homo sapiens}; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 911
Score = 44.0 bits (99), Expect = 1e-04
Identities = 18/85 (21%), Positives = 39/85 (45%)
Frame = -2
Query: 663 IAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDL 484
I +++C + + D +++ + + H + ++R I F + RV++ T
Sbjct: 486 IRSIIVYCKFQYETDMISKYLRDNNINAKGYHSGLPAKDRVRIQESFCSNKIRVVVATVA 545
Query: 483 LARGIDVQQVSCVINYDLPSNRENY 409
G+D V VI++ +P + E Y
Sbjct: 546 FGMGLDKGDVGAVIHFSVPGSMEEY 570
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 42.3 bits (95), Expect = 3e-04
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Frame = -2
Query: 651 VIFCNTRRKVDW----LTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDL 484
V+F T VD+ +++ L+ + HG MDQ+ R+ + F SS VL+ TD+
Sbjct: 242 VVFFMTCACVDYWGLVISKIPSLKSISFFPTHGKMDQKGRDTALASFTEASSGVLLCTDV 301
Query: 483 LARGIDV 463
ARG+D+
Sbjct: 302 AARGLDI 308
>At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly
identical to DNA Helicase [Arabidopsis thaliana]
GI:11121445
Length = 705
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/81 (23%), Positives = 39/81 (48%)
Frame = -2
Query: 651 VIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARG 472
+++C +R++ + + + R + H DMD RE + ++ +V++ T G
Sbjct: 317 IVYCFSRKECEQIAGDLRERGISADYYHADMDANMREKVHMRWSKNKLQVIVGTVAFGMG 376
Query: 471 IDVQQVSCVINYDLPSNRENY 409
I+ V VI++ L + E Y
Sbjct: 377 INKPDVRFVIHHSLSKSMETY 397
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 41.9 bits (94), Expect = 4e-04
Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 9/107 (8%)
Frame = -2
Query: 702 KLETLCDLYDTLSIAQAVIFCN---TRRKVDWLTESMHL--RDFTVSAMHGDMDQREREV 538
K L + + +++ +IFCN T RKV+ + + + R V H + Q R
Sbjct: 622 KKTALLQIMEENPVSKTIIFCNKIETCRKVENIFKRVDRKERQLHVLPFHAALSQESRLT 681
Query: 537 IMRQFRTG----SSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 409
M++F + +S L+ TD +RGID V V+ +D P + Y
Sbjct: 682 NMQEFTSSQPEENSLFLVCTDRASRGIDFSGVDHVVLFDFPRDPSEY 728
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 41.9 bits (94), Expect = 4e-04
Identities = 29/116 (25%), Positives = 49/116 (42%)
Frame = -2
Query: 657 QAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLA 478
+ ++F NT V+ + + + H + ER I+ FR + V + TD A
Sbjct: 426 RTMVFANTVEAVEAVADILEKASIQCYRYHKNHKLDERANILADFRE-TGGVFVCTDAAA 484
Query: 477 RGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXINFVTEADRRALKDIED 310
RG+DV VS VI D S+ ++ + TEA+R ++ I +
Sbjct: 485 RGVDVPNVSHVIQADFASSAVDFLHRIGRTARAGQYGTVTSLYTEANRDLVEAIRE 540
>At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative similar
to CAF protein [Arabidopsis thaliana] GI:6102610;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF03368:
Domain of unknown function, PF00636: RNase3 domain,
PF00035: Double-stranded RNA binding motif
Length = 1676
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = -2
Query: 591 DFTVSAMHG--DMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLP 427
DF V G M +R E I+++F++ +L+ T + G+D+Q VI YDLP
Sbjct: 543 DFLVGLSSGLKSMSRRSMETILKRFQSKELNLLVATKVGEEGLDIQTCCLVIRYDLP 599
>At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to
DNA Helicase [Arabidopsis thaliana] GI:11121449
Length = 1188
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/81 (24%), Positives = 37/81 (45%)
Frame = -2
Query: 651 VIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARG 472
+I+C +R + ++E + + HG M+ +R I Q+ ++ T G
Sbjct: 677 IIYCLSRMDCEKVSERLQEFGHKAAFYHGSMEPEQRAFIQTQWSKDEINIICATVAFGMG 736
Query: 471 IDVQQVSCVINYDLPSNRENY 409
I+ V VI++ LP + E Y
Sbjct: 737 INKPDVRFVIHHSLPKSIEGY 757
>At3g02060.1 68416.m00169 DEAD/DEAH box helicase, putative similar
to C-terminal half of transcription-repair coupling
factor (TRCF) GB:Q55750 [Synechocystis PCC6803];
contains Pfam profile: helicases conserved C-terminal
domain
Length = 823
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/65 (27%), Positives = 36/65 (55%)
Frame = -2
Query: 624 VDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCV 445
+D+L E+ D ++ HG ++ E M +F G ++LI T+++ G+D+Q + +
Sbjct: 497 MDFLEEAFP--DIDIAMAHGKQYSKQLEETMERFAQGKIKILICTNIVESGLDIQNANTI 554
Query: 444 INYDL 430
I D+
Sbjct: 555 IIQDV 559
>At2g01440.1 68415.m00067 ATP-dependent DNA helicase, putative
Length = 953
Score = 38.3 bits (85), Expect = 0.005
Identities = 13/49 (26%), Positives = 30/49 (61%)
Frame = -2
Query: 588 FTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVI 442
+ +HG M ++E + +FR+G +++L++T ++ G+DV S ++
Sbjct: 797 YNCGLLHGRMKSDDKEEALNKFRSGETQILLSTQVIEIGVDVPDASMMV 845
>At1g12700.1 68414.m01473 helicase domain-containing protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles PF01535: PPR repeat, PF00271:
Helicase conserved C-terminal domain
Length = 828
Score = 37.1 bits (82), Expect = 0.012
Identities = 14/66 (21%), Positives = 38/66 (57%)
Frame = -2
Query: 606 SMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLP 427
++ R + ++ D+ + R ++++F+ RVL+T +LL G++ + +++ +LP
Sbjct: 634 TIEARGMNSAELNRDLRKLRRSSVLKKFKNRDVRVLVTNELLTWGLEDAECDLMVDLELP 693
Query: 426 SNRENY 409
++ +Y
Sbjct: 694 TDAVHY 699
>At4g37020.1 68417.m05244 expressed protein
Length = 212
Score = 36.3 bits (80), Expect = 0.020
Identities = 40/184 (21%), Positives = 80/184 (43%), Gaps = 34/184 (18%)
Frame = -2
Query: 708 EWKLETLCDLYDTLSIAQ---AVIFCNTRRKVDWLTESMHLRDF-TVSAMHGDMDQRERE 541
++K+ET+ +L L V+ C++R ++D + S+ + +++A++ D+ RER
Sbjct: 31 QFKMETVVELLGVLGRRPWLPIVVCCSSRDELDAVCSSLSTLPYISLAALYSDLADRERA 90
Query: 540 VIMRQFRTG--------------------------SSRVLITTD----LLARGIDVQQVS 451
+++ +FR +S +++ TD LL+ G
Sbjct: 91 MVIEKFRQATINWNQQLNSVVEEGLEESENGKEEKTSHLVVVTDVCLPLLSSGESSLSAR 150
Query: 450 CVINYDLPSNRENYXXXXXXXXXXXXXXXXINFVTEADRRALKDIEDFYHTSIVEMPSDV 271
+INY+LP+ +E Y IN V + LK +E+ I EMP ++
Sbjct: 151 VLINYELPTKKETY--TRRITTCLASGGIVINMVVGGEVTTLKSLEESSGILIAEMPINI 208
Query: 270 ANLI 259
+ ++
Sbjct: 209 SEIL 212
>At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein
helicase, putative
Length = 2172
Score = 35.1 bits (77), Expect = 0.047
Identities = 15/43 (34%), Positives = 28/43 (65%)
Frame = -2
Query: 570 HGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVI 442
H + + +RE++ QFR G+ +VLI+T LA G+++ + +I
Sbjct: 811 HAGLTRTDREIVENQFRWGNLQVLISTATLAWGVNLPAHTVII 853
>At1g35530.1 68414.m04411 DEAD/DEAH box helicase, putative low
similarity to RNA helicase/RNAseIII CAF protein
[Arabidopsis thaliana] GI:6102610; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1324
Score = 34.3 bits (75), Expect = 0.082
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = -2
Query: 555 QREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYD 433
Q+ ++ ++ +FR G V++ T + G+D+ +V VI +D
Sbjct: 513 QKIQQAVLEKFRAGGFNVIVATSIGEEGLDIMEVDLVICFD 553
>At3g43920.1 68416.m04701 ribonuclease III family protein similar to
RNA helicase/RNAseIII CAF protein [Arabidopsis thaliana]
GI:6102610; contains Pfam profiles PF02170: PAZ domain,
PF00636: RNase3 domain
Length = 1531
Score = 32.3 bits (70), Expect = 0.33
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -2
Query: 525 FRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 409
F+ G +L TD++ G V SC++ +DLP +Y
Sbjct: 417 FQHGKVNLLFITDVVEEGFQVPDCSCMVCFDLPKTMCSY 455
>At3g05740.1 68416.m00644 DNA helicase (RECQI1) identical to DNA
Helicase [Arabidopsis thaliana] GI:10944747
Length = 606
Score = 31.9 bits (69), Expect = 0.44
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = -2
Query: 570 HGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDLPSNRENY 409
H + ++R + R+++TG R++ T GID V VI+ L E+Y
Sbjct: 459 HAGVPAKQRVDVQRKWQTGEVRIVCATIAFGMGIDKADVRFVIHNTLSKAVESY 512
>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /
CAF identical to RNA helicase/RNAseIII CAF protein
GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
Length = 1909
Score = 31.9 bits (69), Expect = 0.44
Identities = 12/45 (26%), Positives = 26/45 (57%)
Frame = -2
Query: 564 DMDQREREVIMRQFRTGSSRVLITTDLLARGIDVQQVSCVINYDL 430
+M + + + +FR G +L+ T + G+D++Q + V+ +DL
Sbjct: 706 EMKSSQMQDTISKFRDGHVTLLVATSVAEEGLDIRQCNVVMRFDL 750
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/59 (23%), Positives = 27/59 (45%)
Frame = -2
Query: 483 LARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXINFVTEADRRALKDIEDF 307
+ RGID ++V VIN+D+P + Y ++ ++ + +DI+ F
Sbjct: 396 VVRGIDFKKVHTVINFDMPQSVTGYIHRIGRTGRAYSSGSSVSLISPDEMEGFEDIKSF 454
>At4g32700.1 68417.m04655 DNA-directed DNA polymerase family protein
similar to DNA helicase HEL308 [Homo sapiens]
GI:19110782; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00476: DNA polymerase family A
Length = 1548
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -2
Query: 582 VSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGIDV 463
V+ H + ERE++ +R G RVL T LA G+++
Sbjct: 296 VAYHHAGLTVEEREIVETCYRKGLVRVLTATSTLAAGVNL 335
>At1g03950.1 68414.m00380 SNF7 family protein contains Pfam domain,
PF03357: SNF7 family
Length = 210
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/39 (30%), Positives = 28/39 (71%)
Frame = -2
Query: 582 VSAMHGDMDQREREVIMRQFRTGSSRVLITTDLLARGID 466
++AM +MD ++ +MR+F+ S+++ +TT++++ ID
Sbjct: 109 MAAMSKNMDPAKQAKVMREFQKQSAQMDMTTEMMSDSID 147
>At5g01710.1 68418.m00088 expressed protein
Length = 513
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = -2
Query: 621 DWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGS 511
DWL +S+ RDF V M D++ E ++I R +TG+
Sbjct: 426 DWLKKSVRERDFVVMKM--DVEGTEFDLIPRLIKTGA 460
>At3g24340.1 68416.m03056 SNF2 domain-containing protein / helicase
domain-containing protein similar to SP|P41410 DNA repair
protein rhp54 (RAD54 homolog) {Schizosaccharomyces
pombe}; contains PFam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 1132
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Frame = -2
Query: 573 MHGDMDQREREVIMRQFR---TGSSRVLITTDLLARGIDVQQVSCVINYDLPSN 421
MHG ++QR+R+ ++ F +GS +L +T + GI + S V+ D+ N
Sbjct: 978 MHGKVEQRDRQHMIDNFNKPDSGSKVLLASTKACSEGISLVGASRVVILDVVWN 1031
>At5g04960.1 68418.m00525 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 564
Score = 28.7 bits (61), Expect = 4.1
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +2
Query: 449 QETCCTSIPRANKSVVIKTREEPVRNCLMITSRSR*SMS--PCIADTVKSRR 598
QETC ++ ANK + E ++N +TS + ++ IADTVK RR
Sbjct: 171 QETCMDALVEANKPSLTTFGENHLKNSTEMTSNALAIITWLGKIADTVKFRR 222
>At2g41210.1 68415.m05089 phosphatidylinositol-4-phosphate 5-kinase
family protein similar to
phosphatidylinositol-4-phosphate 5-kinase AtPIP5K1
[Arabidopsis thaliana] GI:3702691; contains Pfam
profiles PF01504: Phosphatidylinositol-4-phosphate
5-Kinase, PF02493: MORN repeat
Length = 772
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +1
Query: 178 AQWVDLLINIAIERRTQNINRKNVGALDEVGHITGHFNDTSVV-EVLNILQCSPVS 342
++W + + + R + RKN L VG TG F + ++ +++ILQ +S
Sbjct: 676 SRWASIRLGTNMPARAERTMRKNDSELQLVGEPTGEFYEVVMIFGIIDILQDYDIS 731
>At1g05480.1 68414.m00557 SNF2 domain-containing protein / helicase
domain-containing protein low similarity to SP|Q9U7E0
Transcriptional regulator ATRX homolog {Caenorhabditis
elegans}; contains PFam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 588
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 549 EREVIMRQFRTGSSRVLITTDLLARG 472
ER+ I R +R G R++ T L+A+G
Sbjct: 485 ERQAISRAYRIGQKRIVYTYHLVAKG 510
>At5g42120.1 68418.m05128 lectin protein kinase family protein
contains Pfam domains PF00139: Legume lectins beta
domain and PF00069: Protein kinase domain
Length = 691
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +1
Query: 532 HDHFTLTLIHVSMHSRYSKVTQMHRFSEPIHLAT 633
H H++L + H+ + T HRFS P+ T
Sbjct: 3 HHHYSLVIFHLILFLSLDFPTLSHRFSPPLQNLT 36
>At4g01020.1 68417.m00137 helicase domain-containing protein / IBR
domain-containing protein / zinc finger protein-related
similar to SP|Q14562 ATP-dependent helicase DDX8 (RNA
helicase HRH1) (DEAH-box protein 8) {Homo sapiens};
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger),
PF01485: IBR domain
Length = 1787
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/82 (17%), Positives = 36/82 (43%)
Frame = -2
Query: 684 DLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQFRTGSSR 505
+++ T + F ++ +V+W E +HG + E+ ++ + + G +
Sbjct: 514 EIHKTEKEGTILAFLTSQAEVEWACERFVAPSAIALPLHGKLSFEEQFMVFQNY-PGRRK 572
Query: 504 VLITTDLLARGIDVQQVSCVIN 439
V+ T++ + + V VI+
Sbjct: 573 VIFATNIAETSLTIPGVKYVID 594
>At1g01770.1 68414.m00096 expressed protein
Length = 632
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +1
Query: 178 AQWVDLLINIAIERRTQNINRKNVGALDEVG 270
++W+ LL+ +A+ER T I N+GA+D G
Sbjct: 86 SEWMQLLLPLAVERGTCIIT--NMGAIDPSG 114
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,804,212
Number of Sequences: 28952
Number of extensions: 293409
Number of successful extensions: 736
Number of sequences better than 10.0: 89
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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